RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 LBHQ53QV2 105 aaPredicted RBP7.44□□□□□ -1.22
RTN3-202ENST00000339997 FAM201AQ5SY85 155 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 TMEM108Q6UXF1 575 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 NUDT10Q8NFP7 164 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 SRSF12Q8WXF0 261 aaKnown RBP7.44□□□□□ -1.22
RTN3-202ENST00000339997 NUDT11Q96G61 164 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 OR2V2Q96R30 315 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 ANK1P16157 1881 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 A0A0U1RQV5 110 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 C7orf71A4D174 169 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 SLC25A17O43808 307 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 CD55P08174 381 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 CKS2P33552 79 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 CEACAM3P40198 252 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 ATP5G3P48201 142 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 GMPPAQ96IJ6 420 aaPredicted RBP7.44□□□□□ -1.22
RTN3-202ENST00000339997 NAA38Q9BRA0 125 aaKnown RBP7.44□□□□□ -1.22
RTN3-202ENST00000339997 DYSFO75923 2080 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 PTPN13Q12923 2485 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 HPRT1P00492 218 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 MAS1LP35410 378 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 TNFSF10P50591 281 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 FGF12P61328 243 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 P2RY6Q15077 328 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 LY6G6FQ5SQ64 297 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 LEMD1Q68G75 181 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 CALHM1Q8IU99 346 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 ZNRF1Q8ND25 227 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 AICDAQ9GZX7 198 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 CHRNA10Q9GZZ6 450 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 UBTD1Q9HAC8 227 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 TRAV8-6A0A0B4J262 113 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 TMEM14DPA8MWL7 114 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 M0R296 226 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 KBTBD11O94819 623 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 DNAL4O96015 105 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 MOSP00540 346 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 RRN3P1Q2M238 152 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 ATP1A1-AS1Q5TC04 95 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 C19orf48Q6RUI8 117 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 LHFPL4Q7Z7J7 247 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 OR1L8Q8NGR8 309 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 ZNF501Q96CX3 271 aaPredicted RBP7.43□□□□□ -1.22
RTN3-202ENST00000339997 SOX21Q9Y651 276 aaPredicted RBP7.43□□□□□ -1.22
RTN3-202ENST00000339997 DPRXA6NFQ7 191 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 C1QTNF9BB2RNN3 333 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 NPIPB9F8W1W9 429 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 TIAF1O95411 115 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 TNFRSF9Q07011 255 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 CEACAM21Q3KPI0 293 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 SLC25A34Q6PIV7 304 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 GBGT1Q8N5D6 347 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 MBD3L1Q8WWY6 194 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 RNF126Q9BV68 326 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 HSPB7Q9UBY9 170 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 NEUROG3Q9Y4Z2 214 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 POLR2AP24928 1970 aaKnown RBP7.43□□□□□ -1.22
RTN3-202ENST00000339997 H0Y980 276 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 CD8AP01732 235 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 EMP1P54849 157 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 TFF3Q07654 80 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 FBXW9Q5XUX1 488 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 KIR3DL3Q8N743 410 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 C1RLQ9NZP8 487 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 TBL2Q9Y4P3 447 aaKnown RBP7.43□□□□□ -1.22
RTN3-202ENST00000339997 A8MWL6 223 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 TYMSP04818 313 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 ID1P41134 155 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 ZNF506Q5JVG8 444 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 RTN4RL2Q86UN3 420 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 OR4B1Q8NGF8 309 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 OR10S1Q8NGN2 331 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 MYOZ3Q8TDC0 251 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 Q96M66 194 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 GUCD1Q96NT3 240 aa7.43□□□□□ -1.22
RTN3-202ENST00000339997 RTBDNQ9BSG5 229 aaPredicted RBP7.43□□□□□ -1.22
RTN3-202ENST00000339997 SF3B5Q9BWJ5 86 aaKnown RBP7.43□□□□□ -1.22
RTN3-202ENST00000339997 C11orf68Q9H3H3 251 aaKnown RBP7.43□□□□□ -1.22
RTN3-202ENST00000339997 CGAP01215 116 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 MPV17P39210 176 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 RPL39P5Q59GN2 51 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 ASPHD2Q6ICH7 369 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 NPIPB3Q92617 1050 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 SSBP4Q9BWG4 385 aaPredicted RBP7.42□□□□□ -1.22
RTN3-202ENST00000339997 PRNDQ9UKY0 176 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 AMMECR1Q9Y4X0 333 aaPredicted RBP7.42□□□□□ -1.22
RTN3-202ENST00000339997 CSPG4Q6UVK1 2322 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 LRRK1Q38SD2 2015 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 GTF3C1Q12789 2109 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 ZNF729A6NN14 1252 aaPredicted RBP7.42□□□□□ -1.22
RTN3-202ENST00000339997 TGFBR3LH3BV60 316 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 HYPMO75409 117 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 FABP2P12104 132 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 FCGR2BP31994 310 aaPredicted RBP7.42□□□□□ -1.22
RTN3-202ENST00000339997 CENPWQ5EE01 88 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 DRAM1Q8N682 238 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 VSTM2AQ8TAG5 236 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 GATAD1Q8WUU5 269 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 PERPQ96FX8 193 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 COL25A1Q9BXS0 654 aaPredicted RBP7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms