RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 PSENENQ9NZ42 101 aa12.53□□□□□ -0.4
LIMS1-202ENST00000338045 POLR3KQ9Y2Y1 108 aaPredicted RBP12.53□□□□□ -0.4
LIMS1-202ENST00000338045 TRAV3A0A0B4J244 114 aa12.53□□□□□ -0.4
LIMS1-202ENST00000338045 IGHV2-70DA0A0C4DH43 119 aa12.53□□□□□ -0.4
LIMS1-202ENST00000338045 RBMXL2O75526 392 aaKnown RBP12.53□□□□□ -0.4
LIMS1-202ENST00000338045 MC5RP33032 325 aa12.53□□□□□ -0.4
LIMS1-202ENST00000338045 RAB13P51153 203 aa12.53□□□□□ -0.4
LIMS1-202ENST00000338045 OR2B8PP59922 312 aa12.53□□□□□ -0.4
LIMS1-202ENST00000338045 CLEC2AQ6UVW9 174 aa12.53□□□□□ -0.4
LIMS1-202ENST00000338045 OR4C13Q8NGP0 309 aa12.53□□□□□ -0.4
LIMS1-202ENST00000338045 OR4A16Q8NH70 328 aa12.53□□□□□ -0.4
LIMS1-202ENST00000338045 LHX4Q969G2 390 aa12.53□□□□□ -0.4
LIMS1-202ENST00000338045 ARV1Q9H2C2 271 aa12.53□□□□□ -0.4
LIMS1-202ENST00000338045 WASHC3Q9Y3C0 194 aa12.53□□□□□ -0.4
LIMS1-202ENST00000338045 C15orf61A6NNL5 157 aa12.52□□□□□ -0.41
LIMS1-202ENST00000338045 ODF3BA8MYP8 253 aa12.52□□□□□ -0.41
LIMS1-202ENST00000338045 H3BP45 60 aa12.52□□□□□ -0.41
LIMS1-202ENST00000338045 H7C2Y5 167 aa12.52□□□□□ -0.41
LIMS1-202ENST00000338045 FOXH1O75593 365 aa12.52□□□□□ -0.41
LIMS1-202ENST00000338045 CST7O76096 145 aa12.52□□□□□ -0.41
LIMS1-202ENST00000338045 SULT1A1P50225 295 aa12.52□□□□□ -0.41
LIMS1-202ENST00000338045 SPCS3P61009 180 aa12.52□□□□□ -0.41
LIMS1-202ENST00000338045 LCN2P80188 198 aa12.52□□□□□ -0.41
LIMS1-202ENST00000338045 STPG2Q8N412 459 aa12.52□□□□□ -0.41
LIMS1-202ENST00000338045 DTD1Q8TEA8 209 aa12.52□□□□□ -0.41
LIMS1-202ENST00000338045 NRGNQ92686 78 aa12.52□□□□□ -0.41
LIMS1-202ENST00000338045 FLYWCH2Q96CP2 140 aaKnown RBP12.52□□□□□ -0.41
LIMS1-202ENST00000338045 RBMXL1Q96E39 390 aaKnown RBP12.52□□□□□ -0.41
LIMS1-202ENST00000338045 CIB3Q96Q77 187 aaPredicted RBP12.52□□□□□ -0.41
LIMS1-202ENST00000338045 SIRPDQ9H106 197 aa12.52□□□□□ -0.41
LIMS1-202ENST00000338045 TMEM14BQ9NUH8 114 aa12.52□□□□□ -0.41
LIMS1-202ENST00000338045 BET1LQ9NYM9 111 aa12.52□□□□□ -0.41
LIMS1-202ENST00000338045 FOXA2Q9Y261 457 aaPredicted RBP12.52□□□□□ -0.41
LIMS1-202ENST00000338045 UTP20O75691 2785 aaKnown RBP12.52□□□□□ -0.41
LIMS1-202ENST00000338045 J3QKU1 62 aa12.51□□□□□ -0.41
LIMS1-202ENST00000338045 LY86O95711 162 aa12.51□□□□□ -0.41
LIMS1-202ENST00000338045 NMBP08949 121 aa12.51□□□□□ -0.41
LIMS1-202ENST00000338045 PUSL1Q8N0Z8 303 aaKnown RBP12.51□□□□□ -0.41
LIMS1-202ENST00000338045 ZDHHC16Q969W1 377 aa12.51□□□□□ -0.41
LIMS1-202ENST00000338045 HARBI1Q96MB7 349 aa12.51□□□□□ -0.41
LIMS1-202ENST00000338045 SLC25A32Q9H2D1 315 aa12.51□□□□□ -0.41
LIMS1-202ENST00000338045 MMP26Q9NRE1 261 aa12.51□□□□□ -0.41
LIMS1-202ENST00000338045 IGHV1-3A0A0C4DH29 117 aa12.51□□□□□ -0.41
LIMS1-202ENST00000338045 LINC00862A6NCI5 91 aa12.51□□□□□ -0.41
LIMS1-202ENST00000338045 UPK2O00526 184 aa12.51□□□□□ -0.41
LIMS1-202ENST00000338045 SAA1P0DJI8 122 aaPredicted RBP12.51□□□□□ -0.41
LIMS1-202ENST00000338045 TOR2AQ5JU69 321 aa12.51□□□□□ -0.41
LIMS1-202ENST00000338045 LDLRAD2Q5SZI1 272 aa12.51□□□□□ -0.41
LIMS1-202ENST00000338045 TMEM14EPQ6UXP3 125 aa12.51□□□□□ -0.41
LIMS1-202ENST00000338045 OR5C1Q8NGR4 320 aa12.51□□□□□ -0.41
LIMS1-202ENST00000338045 CRYBG3Q68DQ2 2970 aa12.5□□□□□ -0.41
LIMS1-202ENST00000338045 SPG11Q96JI7 2443 aa12.5□□□□□ -0.41
LIMS1-202ENST00000338045 BORCS7-ASMTA0A0B4J1R7 106 aa12.5□□□□□ -0.41
LIMS1-202ENST00000338045 IGHV4-61A0A0C4DH41 118 aa12.5□□□□□ -0.41
LIMS1-202ENST00000338045 IFNA17P01571 189 aa12.5□□□□□ -0.41
LIMS1-202ENST00000338045 ARG1P05089 322 aa12.5□□□□□ -0.41
LIMS1-202ENST00000338045 HTR1DP28221 377 aa12.5□□□□□ -0.41
LIMS1-202ENST00000338045 DYNLT3P51808 116 aa12.5□□□□□ -0.41
LIMS1-202ENST00000338045 FLI1Q01543 452 aaPredicted RBP12.5□□□□□ -0.41
LIMS1-202ENST00000338045 ZNF266Q14584 549 aa12.5□□□□□ -0.41
LIMS1-202ENST00000338045 SPANXN5Q5MJ07 72 aa12.5□□□□□ -0.41
LIMS1-202ENST00000338045 FAM74A1Q5RGS3 127 aa12.5□□□□□ -0.41
LIMS1-202ENST00000338045 ZNF787Q6DD87 383 aa12.5□□□□□ -0.41
LIMS1-202ENST00000338045 VMO1Q7Z5L0 202 aa12.5□□□□□ -0.41
LIMS1-202ENST00000338045 RPEQ96AT9 228 aa12.5□□□□□ -0.41
LIMS1-202ENST00000338045 PERPQ96FX8 193 aa12.5□□□□□ -0.41
LIMS1-202ENST00000338045 PRNDQ9UKY0 176 aa12.5□□□□□ -0.41
LIMS1-202ENST00000338045 INSIG2Q9Y5U4 225 aa12.5□□□□□ -0.41
LIMS1-202ENST00000338045 ASH1LQ9NR48 2969 aaKnown RBP12.5□□□□□ -0.41
LIMS1-202ENST00000338045 IGHV4-30-2A0A087WSY4 118 aa12.49□□□□□ -0.41
LIMS1-202ENST00000338045 CEBPZOSA8MTT3 80 aa12.49□□□□□ -0.41
LIMS1-202ENST00000338045 COL8A1P27658 744 aa12.49□□□□□ -0.41
LIMS1-202ENST00000338045 DSCR9P59020 149 aa12.49□□□□□ -0.41
LIMS1-202ENST00000338045 TMEM267Q0VDI3 215 aaPredicted RBP12.49□□□□□ -0.41
LIMS1-202ENST00000338045 KLRD1Q13241 179 aa12.49□□□□□ -0.41
LIMS1-202ENST00000338045 TPTE2P1Q5T6R2 138 aa12.49□□□□□ -0.41
LIMS1-202ENST00000338045 HAPLN4Q86UW8 402 aa12.49□□□□□ -0.41
LIMS1-202ENST00000338045 TMEM217Q8N7C4 229 aa12.49□□□□□ -0.41
LIMS1-202ENST00000338045 PCNPQ8WW12 178 aaKnown RBP12.49□□□□□ -0.41
LIMS1-202ENST00000338045 TMED6Q8WW62 240 aa12.49□□□□□ -0.41
LIMS1-202ENST00000338045 CITED4Q96RK1 184 aa12.49□□□□□ -0.41
LIMS1-202ENST00000338045 GINS3Q9BRX5 216 aa12.49□□□□□ -0.41
LIMS1-202ENST00000338045 MS4A7Q9GZW8 240 aaPredicted RBP12.49□□□□□ -0.41
LIMS1-202ENST00000338045 DPM3Q9P2X0 92 aa12.49□□□□□ -0.41
LIMS1-202ENST00000338045 TCF19Q9Y242 345 aa12.49□□□□□ -0.41
LIMS1-202ENST00000338045 ZNF257Q9Y2Q1 563 aa12.49□□□□□ -0.41
LIMS1-202ENST00000338045 FBN2P35556 2912 aa12.49□□□□□ -0.41
LIMS1-202ENST00000338045 A0A1W2PPI3 338 aa12.48□□□□□ -0.41
LIMS1-202ENST00000338045 LEUTXA8MZ59 168 aa12.48□□□□□ -0.41
LIMS1-202ENST00000338045 FAM157AC9JC47 383 aa12.48□□□□□ -0.41
LIMS1-202ENST00000338045 TACC2O95359 2948 aa12.48□□□□□ -0.41
LIMS1-202ENST00000338045 IGLV2-23P01705 113 aa12.48□□□□□ -0.41
LIMS1-202ENST00000338045 METTL15P1P0C7V9 234 aa12.48□□□□□ -0.41
LIMS1-202ENST00000338045 HOXB4P17483 251 aaPredicted RBP12.48□□□□□ -0.41
LIMS1-202ENST00000338045 VDAC2P45880 294 aaPredicted RBP12.48□□□□□ -0.41
LIMS1-202ENST00000338045 HSPE1P61604 102 aaKnown RBP12.48□□□□□ -0.41
LIMS1-202ENST00000338045 CLINT1Q14677 625 aa12.48□□□□□ -0.41
LIMS1-202ENST00000338045 EIF5AL1Q6IS14 154 aaKnown RBP12.48□□□□□ -0.41
LIMS1-202ENST00000338045 OR1S2Q8NGQ3 325 aa12.48□□□□□ -0.41
LIMS1-202ENST00000338045 OR4C12Q96R67 309 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms