RNA–Protein interactions for RNA: ENST00000299847.6

CHRFAM7A-201, Transcript of CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRFAM7A, Length 6,220 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRFAM7A-201ENST00000299847 ZNF418Q8TF45 676 aaPredicted RBP11.54□□□□□ -0.56
CHRFAM7A-201ENST00000299847 RGPD3A6NKT7 1758 aaPredicted RBP11.54□□□□□ -0.56
CHRFAM7A-201ENST00000299847 NPIPB11E5RHQ5 1161 aa11.54□□□□□ -0.56
CHRFAM7A-201ENST00000299847 TRGC1P0CF51 173 aa11.54□□□□□ -0.56
CHRFAM7A-201ENST00000299847 FAM209BQ5JX69 171 aa11.54□□□□□ -0.56
CHRFAM7A-201ENST00000299847 SCARF2Q96GP6 870 aaPredicted RBP11.54□□□□□ -0.56
CHRFAM7A-201ENST00000299847 CDC42EP3Q9UKI2 254 aa11.54□□□□□ -0.56
CHRFAM7A-201ENST00000299847 IGKV1D-33P01593 117 aa11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 IGKV1-33P01594 117 aa11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 CD1AP06126 327 aa11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 TDRD6O60522 2096 aaKnown RBP11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 CELA3BP08861 270 aa11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 COX6CP09669 75 aa11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 PARD6GQ9BYG4 376 aaPredicted RBP11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 PKIBQ9C010 78 aa11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 CGAP01215 116 aa11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 GCHFRP30047 84 aa11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 PDLIM4P50479 330 aa11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 CD69Q07108 199 aa11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 LHFPL5Q8TAF8 219 aa11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 GLMPQ8WWB7 406 aa11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 LINC00470Q9BZP3 86 aa11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 JPT1Q9UK76 154 aa11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 TRAV8-6A0A0B4J262 113 aa11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 IL6RP08887 468 aaPredicted RBP11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 GATA2P23769 480 aaPredicted RBP11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 SUMO2P61956 95 aaKnown RBP11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 LHFPL4Q7Z7J7 247 aa11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 SPSB4Q96A44 273 aa11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 GEMIN7Q9H840 131 aaKnown RBP11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 RNASE4P34096 147 aaKnown RBP11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 OR9G1Q8NH87 305 aa11.53□□□□□ -0.56
CHRFAM7A-201ENST00000299847 IGFBP2P18065 325 aa11.52□□□□□ -0.56
CHRFAM7A-201ENST00000299847 SELENOTP62341 195 aa11.52□□□□□ -0.56
CHRFAM7A-201ENST00000299847 ZNF506Q5JVG8 444 aa11.52□□□□□ -0.56
CHRFAM7A-201ENST00000299847 TMEM136Q6ZRR5 245 aa11.52□□□□□ -0.56
CHRFAM7A-201ENST00000299847 MPTX1A8MV57 137 aa11.52□□□□□ -0.57
CHRFAM7A-201ENST00000299847 C1orf100Q5SVJ3 147 aa11.52□□□□□ -0.57
CHRFAM7A-201ENST00000299847 FAM216BQ8N7L0 139 aa11.52□□□□□ -0.57
CHRFAM7A-201ENST00000299847 AQP10Q96PS8 301 aa11.52□□□□□ -0.57
CHRFAM7A-201ENST00000299847 LIPFP07098 398 aa11.52□□□□□ -0.57
CHRFAM7A-201ENST00000299847 FAM159AQ6UWV7 190 aa11.52□□□□□ -0.57
CHRFAM7A-201ENST00000299847 WFDC12Q8WWY7 111 aa11.52□□□□□ -0.57
CHRFAM7A-201ENST00000299847 GALNT14Q96FL9 552 aa11.52□□□□□ -0.57
CHRFAM7A-201ENST00000299847 SCO2A0A1W2PP80 73 aa11.52□□□□□ -0.57
CHRFAM7A-201ENST00000299847 HLA-DQA1P01909 254 aa11.52□□□□□ -0.57
CHRFAM7A-201ENST00000299847 HOXD4P09016 255 aaPredicted RBP11.52□□□□□ -0.57
CHRFAM7A-201ENST00000299847 ZXDCQ2QGD7 858 aaPredicted RBP11.52□□□□□ -0.57
CHRFAM7A-201ENST00000299847 TMEM170BQ5T4T1 132 aa11.52□□□□□ -0.57
CHRFAM7A-201ENST00000299847 BRWD1Q9NSI6 2320 aa11.52□□□□□ -0.57
CHRFAM7A-201ENST00000299847 FOLR2P14207 255 aa11.51□□□□□ -0.57
CHRFAM7A-201ENST00000299847 PET117Q6UWS5 81 aa11.51□□□□□ -0.57
CHRFAM7A-201ENST00000299847 CYP2G1PQ6ZSU1 146 aa11.51□□□□□ -0.57
CHRFAM7A-201ENST00000299847 MRAP2Q96G30 205 aa11.51□□□□□ -0.57
CHRFAM7A-201ENST00000299847 CD24P25063 80 aa11.51□□□□□ -0.57
CHRFAM7A-201ENST00000299847 STARD6P59095 220 aa11.51□□□□□ -0.57
CHRFAM7A-201ENST00000299847 IGHV3-11P01762 117 aa11.51□□□□□ -0.57
CHRFAM7A-201ENST00000299847 SMAGPQ0VAQ4 97 aa11.51□□□□□ -0.57
CHRFAM7A-201ENST00000299847 SYNGR3O43761 229 aa11.51□□□□□ -0.57
CHRFAM7A-201ENST00000299847 RPS11P62280 158 aaKnown RBP eCLIP11.51□□□□□ -0.57
CHRFAM7A-201ENST00000299847 WDR82Q6UXN9 313 aa11.51□□□□□ -0.57
CHRFAM7A-201ENST00000299847 CLEC19AQ6UXS0 136 aa11.51□□□□□ -0.57
CHRFAM7A-201ENST00000299847 LINC00469Q8N7U9 141 aa11.51□□□□□ -0.57
CHRFAM7A-201ENST00000299847 POC1AQ8NBT0 407 aa11.51□□□□□ -0.57
CHRFAM7A-201ENST00000299847 BSPH1Q075Z2 132 aa11.51□□□□□ -0.57
CHRFAM7A-201ENST00000299847 ZNF146Q15072 292 aa11.51□□□□□ -0.57
CHRFAM7A-201ENST00000299847 LINC01590Q5TEZ4 76 aa11.51□□□□□ -0.57
CHRFAM7A-201ENST00000299847 CCDC88CQ9P219 2028 aa11.51□□□□□ -0.57
CHRFAM7A-201ENST00000299847 TRAV24A0A0B4J272 114 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 A0A0B4J293 547 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 SLC25A34Q6PIV7 304 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 C17orf98A8MV24 154 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 SMIM10L1P0DMW3 83 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 ZP1P60852 638 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 SNRPD3P62318 126 aaKnown RBP11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 IFITM2Q01629 132 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 OR10AG1Q8NH19 301 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 ZNF837Q96EG3 531 aaPredicted RBP11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 SMIM10Q96HG1 83 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 TUBA4BQ9H853 241 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 A0A1B0GV90 55 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 GPR183P32249 361 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 C1orf174Q8IYL3 243 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 CEACAM4O75871 244 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 ACP7Q6ZNF0 438 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 C14orf144Q96I85 54 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 KCNS1Q96KK3 526 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 COL25A1Q9BXS0 654 aaPredicted RBP11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 TRAV30A0A087WSZ9 112 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 ZNF729A6NN14 1252 aaPredicted RBP11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 TSPAN13O95857 204 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 MT-ND6P03923 174 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 DANCRP0C864 163 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 CDKN1AP38936 164 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 C2orf68Q2NKX9 166 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 PPP1R32Q7Z5V6 425 aa11.5□□□□□ -0.57
CHRFAM7A-201ENST00000299847 NDUFA3O95167 84 aa11.49□□□□□ -0.57
CHRFAM7A-201ENST00000299847 FAM131CQ96AQ9 280 aa11.49□□□□□ -0.57
CHRFAM7A-201ENST00000299847 SMIM8Q96KF7 97 aa11.49□□□□□ -0.57
CHRFAM7A-201ENST00000299847 SFXN3Q9BWM7 321 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms