RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 CBY3A6NI87 242 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 HSBP1L1C9JCN9 74 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 NDUFB4O95168 129 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 WT1P19544 449 aaPredicted RBP8.38□□□□□ -1.07
LIG3-201ENST00000262327 COX5AP20674 150 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 IGHV1-2P23083 117 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 BRS3P32247 399 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 TFPI2P48307 235 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 TCF23Q7RTU1 214 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 KLF14Q8TD94 323 aaPredicted RBP8.38□□□□□ -1.07
LIG3-201ENST00000262327 WIPI2Q9Y4P8 454 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 FCGR3BO75015 233 aa8.37□□□□□ -1.07
LIG3-201ENST00000262327 OR9G9P0C7N8 305 aa8.37□□□□□ -1.07
LIG3-201ENST00000262327 SRSF6Q13247 344 aaKnown RBP8.37□□□□□ -1.07
LIG3-201ENST00000262327 ZNF146Q15072 292 aa8.37□□□□□ -1.07
LIG3-201ENST00000262327 UTF1Q5T230 341 aa8.37□□□□□ -1.07
LIG3-201ENST00000262327 C11orf42Q8N5U0 333 aa8.37□□□□□ -1.07
LIG3-201ENST00000262327 OR2T10Q8NGZ9 312 aa8.37□□□□□ -1.07
LIG3-201ENST00000262327 NANOS1Q8WY41 292 aaKnown RBP8.37□□□□□ -1.07
LIG3-201ENST00000262327 GVINP1Q7Z2Y8 2422 aa8.37□□□□□ -1.07
LIG3-201ENST00000262327 ZNF292O60281 2723 aa8.37□□□□□ -1.07
LIG3-201ENST00000262327 ARFGEF3Q5TH69 2177 aa8.37□□□□□ -1.07
LIG3-201ENST00000262327 RNF212BA8MTL3 300 aa8.37□□□□□ -1.07
LIG3-201ENST00000262327 HRASP01112 189 aa8.37□□□□□ -1.07
LIG3-201ENST00000262327 GCGP01275 180 aa8.37□□□□□ -1.07
LIG3-201ENST00000262327 CD46P15529 392 aa8.37□□□□□ -1.07
LIG3-201ENST00000262327 CDC34P49427 236 aaPredicted RBP8.37□□□□□ -1.07
LIG3-201ENST00000262327 FOXC1Q12948 553 aa8.37□□□□□ -1.07
LIG3-201ENST00000262327 C1orf185Q5T7R7 199 aa8.37□□□□□ -1.07
LIG3-201ENST00000262327 LEMD1Q68G75 181 aa8.37□□□□□ -1.07
LIG3-201ENST00000262327 IGFL2Q6UWQ7 119 aa8.37□□□□□ -1.07
LIG3-201ENST00000262327 MRPL41Q8IXM3 137 aaKnown RBP8.37□□□□□ -1.07
LIG3-201ENST00000262327 LEAP2Q969E1 77 aa8.37□□□□□ -1.07
LIG3-201ENST00000262327 NEIL1Q96FI4 390 aaPredicted RBP8.37□□□□□ -1.07
LIG3-201ENST00000262327 GSX1Q9H4S2 264 aaPredicted RBP8.37□□□□□ -1.07
LIG3-201ENST00000262327 ZFHX2Q9C0A1 2572 aaPredicted RBP8.37□□□□□ -1.07
LIG3-201ENST00000262327 TRGV5A0A0B4J1U4 118 aa8.36□□□□□ -1.07
LIG3-201ENST00000262327 TRAV3A0A0B4J244 114 aa8.36□□□□□ -1.07
LIG3-201ENST00000262327 ZNF320A2RRD8 509 aa8.36□□□□□ -1.07
LIG3-201ENST00000262327 KLRC4-KLRK1H3BQV0 150 aa8.36□□□□□ -1.07
LIG3-201ENST00000262327 THBS3P49746 956 aa8.36□□□□□ -1.07
LIG3-201ENST00000262327 GNB1P62873 340 aa8.36□□□□□ -1.07
LIG3-201ENST00000262327 SLC24A4Q8NFF2 622 aa8.36□□□□□ -1.07
LIG3-201ENST00000262327 SSMEM1Q8WWF3 244 aa8.36□□□□□ -1.07
LIG3-201ENST00000262327 HCFC1P51610 2035 aa8.36□□□□□ -1.07
LIG3-201ENST00000262327 CEACAM4O75871 244 aa8.36□□□□□ -1.07
LIG3-201ENST00000262327 CATR1Q13166 79 aa8.36□□□□□ -1.07
LIG3-201ENST00000262327 C11orf53Q8IXP5 236 aa8.36□□□□□ -1.07
LIG3-201ENST00000262327 TMEM256Q8N2U0 113 aa8.36□□□□□ -1.07
LIG3-201ENST00000262327 NUDT10Q8NFP7 164 aa8.36□□□□□ -1.07
LIG3-201ENST00000262327 MGAQ8IWI9 3026 aa8.36□□□□□ -1.07
LIG3-201ENST00000262327 IGHV3OR15-7A0A075B7D8 119 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 C15orf62A8K5M9 175 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 NUPR1O60356 82 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 IL6RP08887 468 aaPredicted RBP8.35□□□□□ -1.07
LIG3-201ENST00000262327 CCL11P51671 97 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 MRPL49Q13405 166 aaKnown RBP8.35□□□□□ -1.07
LIG3-201ENST00000262327 RPL39P5Q59GN2 51 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 ZNF766Q5HY98 468 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 Q8IYB0 196 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 ABHD12Q8N2K0 398 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 TRIB1Q96RU8 372 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 TNCP24821 2201 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 INTS1Q8N201 2190 aaKnown RBP8.35□□□□□ -1.07
LIG3-201ENST00000262327 GRIFINA4D1Z8 144 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 FAM90A26D6RGX4 464 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 TMEM250H0YL14 139 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 RRHO14718 337 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 TIMM8AO60220 97 aaPredicted RBP8.35□□□□□ -1.07
LIG3-201ENST00000262327 P0C879 139 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 IL3RAP26951 378 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 FOXF2Q12947 444 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 MIC13Q5XKP0 118 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 TMEM178AQ8NBL3 297 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 PYGO2Q9BRQ0 406 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 AGMATQ9BSE5 352 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 SSUH2Q9Y2M2 353 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 MSRB2Q9Y3D2 182 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 DMXL2Q8TDJ6 3036 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 A0A1W2PPV4 95 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 OOEPA6NGQ2 149 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 AQP7O14520 342 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 RBFOX2O43251 390 aaKnown RBP eCLIP8.35□□□□□ -1.077e-8■■■■□ 24.6
LIG3-201ENST00000262327 PROP1O75360 226 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 DEFB109BQ30KR1 87 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 C1orf194Q5T5A4 169 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 SMIM15Q7Z3B0 74 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 SCNM1Q9BWG6 230 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 HEYLQ9NQ87 328 aaPredicted RBP8.35□□□□□ -1.07
LIG3-201ENST00000262327 GNG12Q9UBI6 72 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 SH3BGRL2Q9UJC5 107 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 ZFP30Q9Y2G7 519 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 TIMM9Q9Y5J7 89 aa8.35□□□□□ -1.07
LIG3-201ENST00000262327 C20orf202A1L168 122 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 TMEM238C9JI98 176 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 CCL25O15444 150 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 CLDN14O95500 239 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 MYOD1P15172 320 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 CD1BP29016 333 aa8.34□□□□□ -1.07
LIG3-201ENST00000262327 VWA1Q6PCB0 445 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms