RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 HLA-DRB3P79483 266 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 HPCAP84074 193 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 RAB31Q13636 194 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 C1DQ13901 141 aaKnown RBP-0.11□□□□□ -2.43
VPS35-212ENST00000640313 ZNF345Q14585 488 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 ELOBQ15370 118 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 EXOC3L4Q17RC7 722 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 LRRC75BQ2VPJ9 315 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 TMEM249Q2WGJ8 235 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 PLPPR5Q32ZL2 321 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 HSP90AA4PQ58FG1 418 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 TMEM31Q5JXX7 168 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 RBM48Q5RL73 367 aaKnown RBP-0.11□□□□□ -2.43
VPS35-212ENST00000640313 FAM27BQ5VT28 67 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 ZNF705AQ6ZN79 300 aaPredicted RBP-0.11□□□□□ -2.43
VPS35-212ENST00000640313 COPS6Q7L5N1 327 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 SSX6Q7RTT6 188 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 DCXRQ7Z4W1 244 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 ATP5L2Q7Z4Y8 100 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 DHFR2Q86XF0 187 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 BAP18Q8IXM2 172 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 LRRC34Q8IZ02 419 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 BLIDQ8IZY5 108 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 RIBC1Q8N443 379 aaPredicted RBP-0.11□□□□□ -2.43
VPS35-212ENST00000640313 C17orf78Q8N4C9 275 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 RPP25LQ8N5L8 163 aaKnown RBP-0.11□□□□□ -2.43
VPS35-212ENST00000640313 OR8B3Q8NGG8 313 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 OR10D3Q8NH80 312 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 DYNC2LI1Q8TCX1 351 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 RNASEH2CQ8TDP1 164 aaKnown RBP-0.11□□□□□ -2.43
VPS35-212ENST00000640313 TMEM239Q8WW34 195 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 ASB13Q8WXK3 278 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 PPCDCQ96CD2 204 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 LINC00526Q96FQ7 95 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 SERPINB11Q96P15 392 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 NMNAT3Q96T66 252 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 PRRG3Q9BZD7 231 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 OR8D2Q9GZM6 311 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 EIF5A2Q9GZV4 153 aaKnown RBP-0.11□□□□□ -2.43
VPS35-212ENST00000640313 TRABDQ9H4I3 376 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 PLAC8Q9NZF1 115 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 DNAJC12Q9UKB3 198 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 BAIAP2Q9UQB8 552 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 ZFP30Q9Y2G7 519 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 CACNA1AO00555 2505 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 TMEM94Q12767 1356 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 KIAA0232Q92628 1395 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 ATAD5Q96QE3 1844 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 COL1A1P02452 1464 aaPredicted RBP-0.11□□□□□ -2.43
VPS35-212ENST00000640313 ZDBF2Q9HCK1 2354 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 ADGRB2O60241 1585 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 SNRNP200O75643 2136 aaKnown RBP-0.11□□□□□ -2.43
VPS35-212ENST00000640313 ZFC3H1O60293 1989 aaKnown RBP-0.12□□□□□ -2.43
VPS35-212ENST00000640313 MYH11P35749 1972 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 CSMD3Q7Z407 3707 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 MUC4Q99102 2169 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 IGF2RP11717 2491 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 LAMA4Q16363 1823 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 ABCA12Q86UK0 2595 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 TENM4Q6N022 2769 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 CHD9Q3L8U1 2897 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 IGKV2D-29A0A075B6S2 120 aaPredicted RBP-0.12□□□□□ -2.43
VPS35-212ENST00000640313 TRBV6-7A0A0A0MS04 114 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 TRAV8-1A0A0A6YYK1 113 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 TRAV38-1A0A0B4J264 116 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 TRBV10-2A0A0K0K1G8 114 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 LINC00854A0A1B0GVQ3 168 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 A0A1B0GW54 56 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 GOLGA8IPA6NC78 632 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 TMEM212A6NML5 194 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 H0YC42 278 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 MKRN2OSH3BPM6 223 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 UBE2L6O14933 153 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 AZIN1O14977 448 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 COCHO43405 550 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 KLRC4O43908 158 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 APOMO95445 188 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 LDOC1O95751 146 aaPredicted RBP-0.12□□□□□ -2.43
VPS35-212ENST00000640313 FADS2O95864 444 aaKnown RBP-0.12□□□□□ -2.43
VPS35-212ENST00000640313 SHBGP04278 402 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 HIST1H1CP16403 213 aaKnown RBP-0.12□□□□□ -2.43
VPS35-212ENST00000640313 CXCL3P19876 107 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 PTMSP20962 102 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 CCL1P22362 96 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 PSMB8P28062 276 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 MIPP30301 263 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 ADORA1P30542 326 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 GRPRP30550 384 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 ZNF93P35789 620 aaPredicted RBP-0.12□□□□□ -2.43
VPS35-212ENST00000640313 CD79BP40259 229 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 EMP1P54849 157 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 RAB8AP61006 207 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 HIST1H4AP62805 103 aaKnown RBP-0.12□□□□□ -2.43
VPS35-212ENST00000640313 RPL30P62888 115 aaKnown RBP-0.12□□□□□ -2.43
VPS35-212ENST00000640313 SUPT4H1P63272 117 aaKnown RBP-0.12□□□□□ -2.43
VPS35-212ENST00000640313 UBE2IP63279 158 aaKnown RBP-0.12□□□□□ -2.43
VPS35-212ENST00000640313 FABP5Q01469 135 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 MGAT3Q09327 533 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 XRCC4Q13426 336 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 FLOT2Q14254 428 aa-0.12□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms