RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 RNF222A6NCQ9 220 aa14.89□□□□□ -0.03
CLN3-254ENST00000637050 H7C2Y5 167 aa14.89□□□□□ -0.03
CLN3-254ENST00000637050 RAB13P51153 203 aa14.89□□□□□ -0.03
CLN3-254ENST00000637050 PDZD9Q8IXQ8 264 aa14.89□□□□□ -0.03
CLN3-254ENST00000637050 VKORC1L1Q8N0U8 176 aa14.89□□□□□ -0.03
CLN3-254ENST00000637050 RBMXL1Q96E39 390 aaKnown RBP14.89□□□□□ -0.03
CLN3-254ENST00000637050 C11orf1Q9H5F2 150 aa14.89□□□□□ -0.03
CLN3-254ENST00000637050 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.89□□□□□ -0.03
CLN3-254ENST00000637050 APCP25054 2843 aa14.88□□□□□ -0.03
CLN3-254ENST00000637050 A0A1W2PPI3 338 aa14.88□□□□□ -0.03
CLN3-254ENST00000637050 L7N2F9 121 aa14.88□□□□□ -0.03
CLN3-254ENST00000637050 OR9G9P0C7N8 305 aa14.88□□□□□ -0.03
CLN3-254ENST00000637050 POLR2GP62487 172 aaKnown RBP eCLIP14.88□□□□□ -0.03
CLN3-254ENST00000637050 MINOS1Q5TGZ0 78 aa14.88□□□□□ -0.03
CLN3-254ENST00000637050 SSX9Q7RTT3 188 aa14.88□□□□□ -0.03
CLN3-254ENST00000637050 LHFPL4Q7Z7J7 247 aa14.88□□□□□ -0.03
CLN3-254ENST00000637050 OR4C13Q8NGP0 309 aa14.88□□□□□ -0.03
CLN3-254ENST00000637050 FLYWCH2Q96CP2 140 aaKnown RBP14.88□□□□□ -0.03
CLN3-254ENST00000637050 AIFM2Q9BRQ8 373 aa14.88□□□□□ -0.03
CLN3-254ENST00000637050 REG4Q9BYZ8 158 aa14.88□□□□□ -0.03
CLN3-254ENST00000637050 TMEM140Q9NV12 185 aa14.88□□□□□ -0.03
CLN3-254ENST00000637050 MINOS1-NBL1R4GNA1 71 aa14.88□□□□□ -0.03
CLN3-254ENST00000637050 GCN1Q92616 2671 aaKnown RBP14.88□□□□□ -0.03
CLN3-254ENST00000637050 A0A1W2PRD5 423 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 A0A1W2PRF3 423 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 A0A1W2PRM7 423 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 SRRM4A7MD48 611 aaKnown RBP14.87□□□□□ -0.03
CLN3-254ENST00000637050 FAM90A26D6RGX4 464 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 E5RGE8 158 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 ZNF345Q14585 488 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 AARDQ4LEZ3 155 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 ACOT7LQ6ZUV0 252 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 MAGT1Q9H0U3 335 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 NSG2Q9Y328 171 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 TRAV20A0A0B4J274 112 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 RNF223E7ERA6 249 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 SHOXO15266 292 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 OR2F2O95006 317 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 NXPH3O95157 252 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 IL6RP08887 468 aaPredicted RBP14.87□□□□□ -0.03
CLN3-254ENST00000637050 OR2F1Q13607 317 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 OR4A47Q6IF82 309 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 MOB3BQ86TA1 216 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 SLC7A5P1Q8MH63 180 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 OR8H3Q8N146 312 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 LINC01356Q8N9X3 169 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 INO80EQ8NBZ0 244 aaPredicted RBP14.87□□□□□ -0.03
CLN3-254ENST00000637050 HSPB7Q9UBY9 170 aa14.87□□□□□ -0.03
CLN3-254ENST00000637050 TBL2Q9Y4P3 447 aaKnown RBP14.87□□□□□ -0.03
CLN3-254ENST00000637050 CSMD2Q7Z408 3487 aa14.86□□□□□ -0.03
CLN3-254ENST00000637050 POLQO75417 2590 aa14.86□□□□□ -0.03
CLN3-254ENST00000637050 IGHV3-72A0A0B4J1Y9 119 aa14.86□□□□□ -0.03
CLN3-254ENST00000637050 A0A0D9SG52 128 aa14.86□□□□□ -0.03
CLN3-254ENST00000637050 OOSP1A8MZH6 123 aa14.86□□□□□ -0.03
CLN3-254ENST00000637050 KCNAB3O43448 404 aa14.86□□□□□ -0.03
CLN3-254ENST00000637050 LGALS4P56470 323 aa14.86□□□□□ -0.03
CLN3-254ENST00000637050 RELBQ01201 579 aa14.86□□□□□ -0.03
CLN3-254ENST00000637050 TMUB2Q71RG4 321 aa14.86□□□□□ -0.03
CLN3-254ENST00000637050 KCNRGQ8N5I3 272 aa14.86□□□□□ -0.03
CLN3-254ENST00000637050 SUN5Q8TC36 379 aa14.86□□□□□ -0.03
CLN3-254ENST00000637050 HARBI1Q96MB7 349 aa14.86□□□□□ -0.03
CLN3-254ENST00000637050 Q96MF0 132 aa14.86□□□□□ -0.03
CLN3-254ENST00000637050 AQP10Q96PS8 301 aa14.86□□□□□ -0.03
CLN3-254ENST00000637050 HILPDAQ9Y5L2 63 aa14.86□□□□□ -0.03
CLN3-254ENST00000637050 MED13LQ71F56 2210 aa14.86□□□□□ -0.03
CLN3-254ENST00000637050 ABCA12Q86UK0 2595 aa14.85□□□□□ -0.03
CLN3-254ENST00000637050 MSGN1A6NI15 193 aa14.85□□□□□ -0.03
CLN3-254ENST00000637050 SSSCA1O60232 199 aa14.85□□□□□ -0.03
CLN3-254ENST00000637050 GATA3P23771 443 aa14.85□□□□□ -0.03
CLN3-254ENST00000637050 S100A11P31949 105 aa14.85□□□□□ -0.03
CLN3-254ENST00000637050 TNFRSF9Q07011 255 aa14.85□□□□□ -0.03
CLN3-254ENST00000637050 HABP2Q14520 560 aaPredicted RBP14.85□□□□□ -0.03
CLN3-254ENST00000637050 PUSL1Q8N0Z8 303 aaKnown RBP14.85□□□□□ -0.03
CLN3-254ENST00000637050 MS4A7Q9GZW8 240 aaPredicted RBP14.85□□□□□ -0.03
CLN3-254ENST00000637050 HIF1ANQ9NWT6 349 aa14.85□□□□□ -0.03
CLN3-254ENST00000637050 AUP1Q9Y679 476 aa14.85□□□□□ -0.03
CLN3-254ENST00000637050 TRAV3A0A0B4J244 114 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 CENPVL3A0A0U1RRI6 287 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 WRBO00258 174 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 TIMM23O14925 209 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 SYNGR2O43760 224 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 CHST1O43916 411 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 SAA1P0DJI8 122 aaPredicted RBP14.84□□□□□ -0.03
CLN3-254ENST00000637050 PVALBP20472 110 aaPredicted RBP14.84□□□□□ -0.03
CLN3-254ENST00000637050 C4BPBP20851 252 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 P2RY1P47900 373 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 AP2S1P53680 142 aaPredicted RBP14.84□□□□□ -0.03
CLN3-254ENST00000637050 RPS16P62249 146 aaKnown RBP14.84□□□□□ -0.03
CLN3-254ENST00000637050 OR4A16Q8NH70 328 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 CFHR4Q92496 578 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 AJUBAQ96IF1 538 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 ARL6Q9H0F7 186 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 BET1LQ9NYM9 111 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 TMEM50AO95807 157 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 IGLV2-23P01705 113 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 HKR1P10072 659 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 CD1BP29016 333 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 NUP62P37198 522 aaPredicted RBP14.84□□□□□ -0.03
CLN3-254ENST00000637050 LGALS7P47929 136 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 PAX9P55771 341 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms