RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 WNT10AQ9GZT5 417 aa14.29□□□□□ -0.12
CLN3-243ENST00000635973 PARP11Q9NR21 331 aa14.29□□□□□ -0.12
CLN3-243ENST00000635973 MCUBQ9NWR8 336 aa14.29□□□□□ -0.12
CLN3-243ENST00000635973 LINC00527Q9UJ94 153 aa14.29□□□□□ -0.12
CLN3-243ENST00000635973 FAUP35544 74 aaKnown RBP14.28□□□□□ -0.12
CLN3-243ENST00000635973 INPP1P49441 399 aa14.28□□□□□ -0.12
CLN3-243ENST00000635973 UCP3P55916 312 aa14.28□□□□□ -0.12
CLN3-243ENST00000635973 TRIQKQ629K1 86 aa14.28□□□□□ -0.12
CLN3-243ENST00000635973 REC114Q7Z4M0 266 aa14.28□□□□□ -0.12
CLN3-243ENST00000635973 SPAG16Q8N0X2 631 aa14.28□□□□□ -0.12
CLN3-243ENST00000635973 TOMM5Q8N4H5 51 aa14.28□□□□□ -0.12
CLN3-243ENST00000635973 CHPT1Q8WUD6 406 aa14.28□□□□□ -0.12
CLN3-243ENST00000635973 PRRT1Q99946 306 aa14.28□□□□□ -0.12
CLN3-243ENST00000635973 RSRP1Q9BUV0 290 aa14.28□□□□□ -0.12
CLN3-243ENST00000635973 A0A1W2PRX2 142 aa14.27□□□□□ -0.13
CLN3-243ENST00000635973 PSMB11A5LHX3 300 aa14.27□□□□□ -0.13
CLN3-243ENST00000635973 LINC01548A6NM66 108 aa14.27□□□□□ -0.13
CLN3-243ENST00000635973 PGLYRP1O75594 196 aaPredicted RBP14.27□□□□□ -0.13
CLN3-243ENST00000635973 CA2P00918 260 aa14.27□□□□□ -0.13
CLN3-243ENST00000635973 IGLV2-23P01705 113 aa14.27□□□□□ -0.13
CLN3-243ENST00000635973 PF4V1P10720 104 aa14.27□□□□□ -0.13
CLN3-243ENST00000635973 VDAC1P21796 283 aa14.27□□□□□ -0.13
CLN3-243ENST00000635973 GNB1P62873 340 aa14.27□□□□□ -0.13
CLN3-243ENST00000635973 SLC35B1P78383 322 aa14.27□□□□□ -0.13
CLN3-243ENST00000635973 LHFPL1Q86WI0 220 aa14.27□□□□□ -0.13
CLN3-243ENST00000635973 STPG2Q8N412 459 aa14.27□□□□□ -0.13
CLN3-243ENST00000635973 OR4X2Q8NGF9 303 aa14.27□□□□□ -0.13
CLN3-243ENST00000635973 TERB2Q8NHR7 220 aa14.27□□□□□ -0.13
CLN3-243ENST00000635973 CD300LFQ8TDQ1 290 aa14.27□□□□□ -0.13
CLN3-243ENST00000635973 TRIM63Q969Q1 353 aa14.27□□□□□ -0.13
CLN3-243ENST00000635973 OR51J1Q9H342 316 aa14.27□□□□□ -0.13
CLN3-243ENST00000635973 TPSG1Q9NRR2 321 aa14.27□□□□□ -0.13
CLN3-243ENST00000635973 IGHV7-81A0A0B4J1V7 117 aa14.26□□□□□ -0.13
CLN3-243ENST00000635973 SRRM4A7MD48 611 aaKnown RBP14.26□□□□□ -0.13
CLN3-243ENST00000635973 RAMP3O60896 148 aa14.26□□□□□ -0.13
CLN3-243ENST00000635973 CD33P20138 364 aa14.26□□□□□ -0.13
CLN3-243ENST00000635973 ECI1P42126 302 aa14.26□□□□□ -0.13
CLN3-243ENST00000635973 UBE2KP61086 200 aa14.26□□□□□ -0.13
CLN3-243ENST00000635973 OXLD1Q5BKU9 147 aa14.26□□□□□ -0.13
CLN3-243ENST00000635973 KPRPQ5T749 579 aaPredicted RBP14.26□□□□□ -0.13
CLN3-243ENST00000635973 ZNF57Q68EA5 555 aaPredicted RBP14.26□□□□□ -0.13
CLN3-243ENST00000635973 PPP1R27Q86WC6 154 aa14.26□□□□□ -0.13
CLN3-243ENST00000635973 GDPD1Q8N9F7 314 aa14.26□□□□□ -0.13
CLN3-243ENST00000635973 GON7Q9BXV9 100 aa14.26□□□□□ -0.13
CLN3-243ENST00000635973 PTTG2Q9NZH5 202 aa14.26□□□□□ -0.13
CLN3-243ENST00000635973 SCP2D1Q9UJQ7 156 aa14.26□□□□□ -0.13
CLN3-243ENST00000635973 TCRBV4S1A1TA0A5B7 111 aa14.25□□□□□ -0.13
CLN3-243ENST00000635973 FCN1O00602 326 aa14.25□□□□□ -0.13
CLN3-243ENST00000635973 ATP6V0E1O15342 81 aa14.25□□□□□ -0.13
CLN3-243ENST00000635973 RBFOX2O43251 390 aaKnown RBP eCLIP14.25□□□□□ -0.13
CLN3-243ENST00000635973 CREBL2O60519 120 aaPredicted RBP14.25□□□□□ -0.13
CLN3-243ENST00000635973 HRASP01112 189 aa14.25□□□□□ -0.13
CLN3-243ENST00000635973 PRB2P02812 416 aaPredicted RBP14.25□□□□□ -0.13
CLN3-243ENST00000635973 ZNF735P0CB33 412 aa14.25□□□□□ -0.13
CLN3-243ENST00000635973 SAA1P0DJI8 122 aaPredicted RBP14.25□□□□□ -0.13
CLN3-243ENST00000635973 PI3P19957 117 aa14.25□□□□□ -0.13
CLN3-243ENST00000635973 ZNF45Q02386 682 aa14.25□□□□□ -0.13
CLN3-243ENST00000635973 KLF9Q13886 244 aaPredicted RBP14.25□□□□□ -0.13
CLN3-243ENST00000635973 KHDC1LQ5JSQ8 128 aa14.25□□□□□ -0.13
CLN3-243ENST00000635973 IDO2Q6ZQW0 420 aa14.25□□□□□ -0.13
CLN3-243ENST00000635973 ZNF329Q86UD4 541 aa14.25□□□□□ -0.13
CLN3-243ENST00000635973 TBC1D26Q86UD7 250 aa14.25□□□□□ -0.13
CLN3-243ENST00000635973 TEX45Q8NA69 505 aa14.25□□□□□ -0.13
CLN3-243ENST00000635973 OR51S1Q8NGJ8 323 aa14.25□□□□□ -0.13
CLN3-243ENST00000635973 ZFAND1Q8TCF1 268 aa14.25□□□□□ -0.13
CLN3-243ENST00000635973 MARCH1Q8TCQ1 289 aa14.25□□□□□ -0.13
CLN3-243ENST00000635973 WIPF2Q8TF74 440 aaPredicted RBP14.25□□□□□ -0.13
CLN3-243ENST00000635973 ZNF486Q96H40 463 aaPredicted RBP14.25□□□□□ -0.13
CLN3-243ENST00000635973 SLC2A9Q9NRM0 540 aa14.25□□□□□ -0.13
CLN3-243ENST00000635973 C14orf166Q9Y224 244 aaKnown RBP14.25□□□□□ -0.13
CLN3-243ENST00000635973 CNIH1O95406 144 aa14.24□□□□□ -0.13
CLN3-243ENST00000635973 HPRT1P00492 218 aa14.24□□□□□ -0.13
CLN3-243ENST00000635973 PIGPP57054 158 aa14.24□□□□□ -0.13
CLN3-243ENST00000635973 CX3CL1P78423 397 aa14.24□□□□□ -0.13
CLN3-243ENST00000635973 ECSCRQ19T08 205 aa14.24□□□□□ -0.13
CLN3-243ENST00000635973 SSX9Q7RTT3 188 aa14.24□□□□□ -0.13
CLN3-243ENST00000635973 VKORC1L1Q8N0U8 176 aa14.24□□□□□ -0.13
CLN3-243ENST00000635973 CCDC71LQ8N9Z2 235 aa14.24□□□□□ -0.13
CLN3-243ENST00000635973 OR13C8Q8NGS7 320 aa14.24□□□□□ -0.13
CLN3-243ENST00000635973 GRPEL2Q8TAA5 225 aa14.24□□□□□ -0.13
CLN3-243ENST00000635973 VSTM2AQ8TAG5 236 aa14.24□□□□□ -0.13
CLN3-243ENST00000635973 ARPC1AQ92747 370 aa14.24□□□□□ -0.13
CLN3-243ENST00000635973 AIFM2Q9BRQ8 373 aa14.24□□□□□ -0.13
CLN3-243ENST00000635973 COPZ2Q9P299 210 aa14.24□□□□□ -0.13
CLN3-243ENST00000635973 ADARB2-AS1A8MUL3 147 aa14.23□□□□□ -0.13
CLN3-243ENST00000635973 ACTL6BO94805 426 aa14.23□□□□□ -0.13
CLN3-243ENST00000635973 PF4P02776 101 aa14.23□□□□□ -0.13
CLN3-243ENST00000635973 IGF1P05019 195 aa14.23□□□□□ -0.13
CLN3-243ENST00000635973 CRYGBP07316 175 aa14.23□□□□□ -0.13
CLN3-243ENST00000635973 F2RP25116 425 aa14.23□□□□□ -0.13
CLN3-243ENST00000635973 BRWD1-AS2P59051 145 aa14.23□□□□□ -0.13
CLN3-243ENST00000635973 ERVK-16P61578 105 aa14.23□□□□□ -0.13
CLN3-243ENST00000635973 NDPQ00604 133 aa14.23□□□□□ -0.13
CLN3-243ENST00000635973 CD83Q01151 205 aa14.23□□□□□ -0.13
CLN3-243ENST00000635973 FXYD3Q14802 87 aa14.23□□□□□ -0.13
CLN3-243ENST00000635973 C10orf99Q6UWK7 81 aa14.23□□□□□ -0.13
CLN3-243ENST00000635973 TCTEX1D1Q8N7M0 179 aa14.23□□□□□ -0.13
CLN3-243ENST00000635973 HRASLSQ9HDD0 168 aa14.23□□□□□ -0.13
CLN3-243ENST00000635973 SLC2A8Q9NY64 477 aa14.23□□□□□ -0.13
CLN3-243ENST00000635973 COMMD9Q9P000 198 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms