RNA–Protein interactions for RNA: ENST00000635450.2

LINC00339-209, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 947 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-209ENST00000635450 P2RX4Q99571 388 aa12.15□□□□□ -0.46
LINC00339-209ENST00000635450 ZNF2Q9BSG1 426 aaPredicted RBP12.15□□□□□ -0.46
LINC00339-209ENST00000635450 TPSG1Q9NRR2 321 aa12.15□□□□□ -0.46
LINC00339-209ENST00000635450 SRRM4A7MD48 611 aaKnown RBP12.14□□□□□ -0.47
LINC00339-209ENST00000635450 CTDSP2O14595 271 aa12.14□□□□□ -0.47
LINC00339-209ENST00000635450 TNFSF12O43508 249 aa12.14□□□□□ -0.47
LINC00339-209ENST00000635450 CREBL2O60519 120 aaPredicted RBP12.14□□□□□ -0.47
LINC00339-209ENST00000635450 CRYGBP07316 175 aa12.14□□□□□ -0.47
LINC00339-209ENST00000635450 PSMB8P28062 276 aa12.14□□□□□ -0.47
LINC00339-209ENST00000635450 CD40LGP29965 261 aa12.14□□□□□ -0.47
LINC00339-209ENST00000635450 CDX1P47902 265 aaPredicted RBP12.14□□□□□ -0.47
LINC00339-209ENST00000635450 CRIP2P52943 208 aaPredicted RBP12.14□□□□□ -0.47
LINC00339-209ENST00000635450 EGFEM1PQ0D2K5 195 aa12.14□□□□□ -0.47
LINC00339-209ENST00000635450 RNASE12Q5GAN4 147 aaKnown RBP12.14□□□□□ -0.47
LINC00339-209ENST00000635450 LYSMD2Q8IV50 215 aa12.14□□□□□ -0.47
LINC00339-209ENST00000635450 LAX1Q8IWV1 398 aa12.14□□□□□ -0.47
LINC00339-209ENST00000635450 GRPEL2Q8TAA5 225 aa12.14□□□□□ -0.47
LINC00339-209ENST00000635450 MOB3AQ96BX8 217 aa12.14□□□□□ -0.47
LINC00339-209ENST00000635450 FAM103A1Q9BTL3 118 aaKnown RBP12.14□□□□□ -0.47
LINC00339-209ENST00000635450 FOXA2Q9Y261 457 aaPredicted RBP12.14□□□□□ -0.47
LINC00339-209ENST00000635450 FBXO7Q9Y3I1 522 aa12.14□□□□□ -0.47
LINC00339-209ENST00000635450 NUBP2Q9Y5Y2 271 aa12.14□□□□□ -0.47
LINC00339-209ENST00000635450 EIF4EBP1Q13541 118 aaPredicted RBP12.13□□□□□ -0.47
LINC00339-209ENST00000635450 AKIRIN2Q53H80 203 aa12.13□□□□□ -0.47
LINC00339-209ENST00000635450 ACTBL2Q562R1 376 aa12.13□□□□□ -0.47
LINC00339-209ENST00000635450 PYHIN1Q6K0P9 492 aa12.13□□□□□ -0.47
LINC00339-209ENST00000635450 C11orf87Q6NUJ2 197 aa12.13□□□□□ -0.47
LINC00339-209ENST00000635450 ZNF818PQ6ZRF7 136 aa12.13□□□□□ -0.47
LINC00339-209ENST00000635450 MINDY2Q8NBR6 621 aa12.13□□□□□ -0.47
LINC00339-209ENST00000635450 LFNGQ8NES3 379 aa12.13□□□□□ -0.47
LINC00339-209ENST00000635450 OR5M8Q8NGP6 311 aa12.13□□□□□ -0.47
LINC00339-209ENST00000635450 FCAMRQ8WWV6 532 aa12.13□□□□□ -0.47
LINC00339-209ENST00000635450 DIRAS2Q96HU8 199 aa12.13□□□□□ -0.47
LINC00339-209ENST00000635450 C6orf62Q9GZU0 229 aaPredicted RBP12.13□□□□□ -0.47
LINC00339-209ENST00000635450 MIXL1Q9H2W2 232 aa12.13□□□□□ -0.47
LINC00339-209ENST00000635450 RABL2AQ9UBK7 228 aaPredicted RBP12.13□□□□□ -0.47
LINC00339-209ENST00000635450 RABL2BQ9UNT1 228 aa12.13□□□□□ -0.47
LINC00339-209ENST00000635450 CEPT1Q9Y6K0 416 aa12.13□□□□□ -0.47
LINC00339-209ENST00000635450 ACTL6BO94805 426 aa12.12□□□□□ -0.47
LINC00339-209ENST00000635450 HRASP01112 189 aa12.12□□□□□ -0.47
LINC00339-209ENST00000635450 IGLV1-40P01703 118 aa12.12□□□□□ -0.47
LINC00339-209ENST00000635450 IFNA6P05013 189 aa12.12□□□□□ -0.47
LINC00339-209ENST00000635450 EGR2P11161 476 aaPredicted RBP12.12□□□□□ -0.47
LINC00339-209ENST00000635450 MYCNOSP40205 109 aa12.12□□□□□ -0.47
LINC00339-209ENST00000635450 RAB9AP51151 201 aa12.12□□□□□ -0.47
LINC00339-209ENST00000635450 PJVKQ0ZLH3 352 aa12.12□□□□□ -0.47
LINC00339-209ENST00000635450 TNXAQ16473 311 aa12.12□□□□□ -0.47
LINC00339-209ENST00000635450 CMTM1Q8IZ96 169 aa12.12□□□□□ -0.47
LINC00339-209ENST00000635450 POC5Q8NA72 575 aa12.12□□□□□ -0.47
LINC00339-209ENST00000635450 OR52I2Q8NH67 350 aa12.12□□□□□ -0.47
LINC00339-209ENST00000635450 VSTM2AQ8TAG5 236 aa12.12□□□□□ -0.47
LINC00339-209ENST00000635450 GPHA2Q96T91 129 aa12.12□□□□□ -0.47
LINC00339-209ENST00000635450 PHB2Q99623 299 aa12.12□□□□□ -0.47
LINC00339-209ENST00000635450 AIFM2Q9BRQ8 373 aa12.12□□□□□ -0.47
LINC00339-209ENST00000635450 KLK11Q9UBX7 282 aa12.12□□□□□ -0.47
LINC00339-209ENST00000635450 ARPC1BO15143 372 aaKnown RBP12.11□□□□□ -0.47
LINC00339-209ENST00000635450 SAA1P0DJI8 122 aaPredicted RBP12.11□□□□□ -0.47
LINC00339-209ENST00000635450 S100GP29377 79 aa12.11□□□□□ -0.47
LINC00339-209ENST00000635450 GNRHRP30968 328 aa12.11□□□□□ -0.47
LINC00339-209ENST00000635450 MRPS10P82664 201 aaKnown RBP12.11□□□□□ -0.47
LINC00339-209ENST00000635450 IL18Q14116 193 aa12.11□□□□□ -0.47
LINC00339-209ENST00000635450 C19orf54Q5BKX5 351 aa12.11□□□□□ -0.47
LINC00339-209ENST00000635450 AADACL3Q5VUY0 350 aa12.11□□□□□ -0.47
LINC00339-209ENST00000635450 LPCAT3Q6P1A2 487 aa12.11□□□□□ -0.47
LINC00339-209ENST00000635450 IDO2Q6ZQW0 420 aa12.11□□□□□ -0.47
LINC00339-209ENST00000635450 MMD2Q8IY49 270 aa12.11□□□□□ -0.47
LINC00339-209ENST00000635450 SPAG16Q8N0X2 631 aa12.11□□□□□ -0.47
LINC00339-209ENST00000635450 OR51H1Q8NH63 302 aa12.11□□□□□ -0.47
LINC00339-209ENST00000635450 UBE2E2Q96LR5 201 aa12.11□□□□□ -0.47
LINC00339-209ENST00000635450 TMEM68Q96MH6 324 aa12.11□□□□□ -0.47
LINC00339-209ENST00000635450 ABHD1Q96SE0 405 aa12.11□□□□□ -0.47
LINC00339-209ENST00000635450 KLK15Q9H2R5 256 aa12.11□□□□□ -0.47
LINC00339-209ENST00000635450 MTFP1Q9UDX5 166 aa12.11□□□□□ -0.47
LINC00339-209ENST00000635450 TNCP24821 2201 aa12.1□□□□□ -0.47
LINC00339-209ENST00000635450 GABARAPH6UMI1 98 aa12.1□□□□□ -0.47
LINC00339-209ENST00000635450 RAB25P57735 213 aa12.1□□□□□ -0.47
LINC00339-209ENST00000635450 PRSS8Q16651 343 aa12.1□□□□□ -0.47
LINC00339-209ENST00000635450 RNASE10Q5GAN6 216 aaKnown RBP12.1□□□□□ -0.47
LINC00339-209ENST00000635450 VAX1Q5SQQ9 334 aa12.1□□□□□ -0.47
LINC00339-209ENST00000635450 ZNF491Q8N8L2 437 aa12.1□□□□□ -0.47
LINC00339-209ENST00000635450 MCFD2Q8NI22 146 aa12.1□□□□□ -0.47
LINC00339-209ENST00000635450 MYOZ3Q8TDC0 251 aa12.1□□□□□ -0.47
LINC00339-209ENST00000635450 CD300LFQ8TDQ1 290 aa12.1□□□□□ -0.47
LINC00339-209ENST00000635450 C4orf3Q8WVX3 66 aa12.1□□□□□ -0.47
LINC00339-209ENST00000635450 SLIRPQ9GZT3 109 aaKnown RBP12.1□□□□□ -0.47
LINC00339-209ENST00000635450 FXYD6Q9H0Q3 95 aa12.1□□□□□ -0.47
LINC00339-209ENST00000635450 SLA2Q9H6Q3 261 aa12.1□□□□□ -0.47
LINC00339-209ENST00000635450 ZNF355PQ9NSJ1 428 aa12.1□□□□□ -0.47
LINC00339-209ENST00000635450 RSL24D1Q9UHA3 163 aaKnown RBP12.1□□□□□ -0.47
LINC00339-209ENST00000635450 VSIG4Q9Y279 399 aa12.1□□□□□ -0.47
LINC00339-209ENST00000635450 M0QYG6 137 aa12.09□□□□□ -0.47
LINC00339-209ENST00000635450 CCL24O00175 119 aa12.09□□□□□ -0.47
LINC00339-209ENST00000635450 GPR31O00270 319 aa12.09□□□□□ -0.47
LINC00339-209ENST00000635450 MPPED1O15442 326 aa12.09□□□□□ -0.47
LINC00339-209ENST00000635450 RBFOX2O43251 390 aaKnown RBP eCLIP12.09□□□□□ -0.47
LINC00339-209ENST00000635450 SOX15O60248 233 aa12.09□□□□□ -0.47
LINC00339-209ENST00000635450 OR2A4O95047 310 aa12.09□□□□□ -0.47
LINC00339-209ENST00000635450 DUS4LO95620 317 aaKnown RBP12.09□□□□□ -0.47
LINC00339-209ENST00000635450 HPRT1P00492 218 aa12.09□□□□□ -0.47
LINC00339-209ENST00000635450 TBPP20226 339 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms