RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 KHDC1LQ5JSQ8 128 aa10.55□□□□□ -0.72
LINC00540-202ENST00000616974 ASPHD1Q5U4P2 390 aa10.55□□□□□ -0.72
LINC00540-202ENST00000616974 PPP1R27Q86WC6 154 aa10.55□□□□□ -0.72
LINC00540-202ENST00000616974 Q8N402 240 aa10.55□□□□□ -0.72
LINC00540-202ENST00000616974 LFNGQ8NES3 379 aa10.55□□□□□ -0.72
LINC00540-202ENST00000616974 OR13C8Q8NGS7 320 aa10.55□□□□□ -0.72
LINC00540-202ENST00000616974 MARCH1Q8TCQ1 289 aa10.55□□□□□ -0.72
LINC00540-202ENST00000616974 HSD17B10Q99714 261 aaKnown RBP10.55□□□□□ -0.72
LINC00540-202ENST00000616974 THAP7Q9BT49 309 aaPredicted RBP10.55□□□□□ -0.72
LINC00540-202ENST00000616974 ZNF430Q9H8G1 570 aaPredicted RBP10.55□□□□□ -0.72
LINC00540-202ENST00000616974 ANKRD20A5PA0PJZ0 165 aa10.55□□□□□ -0.72
LINC00540-202ENST00000616974 AP4M1O00189 453 aa10.55□□□□□ -0.72
LINC00540-202ENST00000616974 GSTZ1O43708 216 aaPredicted RBP10.55□□□□□ -0.72
LINC00540-202ENST00000616974 RBMXL2O75526 392 aaKnown RBP10.55□□□□□ -0.72
LINC00540-202ENST00000616974 PPIFP30405 207 aaKnown RBP10.55□□□□□ -0.72
LINC00540-202ENST00000616974 DEFB136Q30KP8 78 aa10.55□□□□□ -0.72
LINC00540-202ENST00000616974 C19orf54Q5BKX5 351 aa10.55□□□□□ -0.72
LINC00540-202ENST00000616974 OR51S1Q8NGJ8 323 aa10.55□□□□□ -0.72
LINC00540-202ENST00000616974 RSRP1Q9BUV0 290 aa10.55□□□□□ -0.72
LINC00540-202ENST00000616974 SRRQ9GZT4 340 aa10.55□□□□□ -0.72
LINC00540-202ENST00000616974 IGKV1-39P01597 117 aa10.54□□□□□ -0.72
LINC00540-202ENST00000616974 IGKV1D-39P04432 117 aa10.54□□□□□ -0.72
LINC00540-202ENST00000616974 IGF1P05019 195 aa10.54□□□□□ -0.72
LINC00540-202ENST00000616974 S100A5P33763 92 aa10.54□□□□□ -0.72
LINC00540-202ENST00000616974 TAS2R19P59542 299 aa10.54□□□□□ -0.72
LINC00540-202ENST00000616974 ABHD5Q8WTS1 349 aa10.54□□□□□ -0.72
LINC00540-202ENST00000616974 SLC2A9Q9NRM0 540 aa10.54□□□□□ -0.72
LINC00540-202ENST00000616974 KLF9Q13886 244 aaPredicted RBP10.54□□□□□ -0.72
LINC00540-202ENST00000616974 IZUMO4Q1ZYL8 232 aa10.54□□□□□ -0.72
LINC00540-202ENST00000616974 ZNF66Q6ZN08 573 aa10.54□□□□□ -0.72
LINC00540-202ENST00000616974 TBC1D26Q86UD7 250 aa10.54□□□□□ -0.72
LINC00540-202ENST00000616974 FOXRED2Q8IWF2 684 aa10.54□□□□□ -0.72
LINC00540-202ENST00000616974 RHOVQ96L33 236 aa10.54□□□□□ -0.72
LINC00540-202ENST00000616974 TSNAXQ99598 290 aaKnown RBP10.54□□□□□ -0.72
LINC00540-202ENST00000616974 PRR13Q9NZ81 148 aa10.54□□□□□ -0.72
LINC00540-202ENST00000616974 GPR31O00270 319 aa10.53□□□□□ -0.72
LINC00540-202ENST00000616974 TPPPO94811 219 aa10.53□□□□□ -0.72
LINC00540-202ENST00000616974 ETV6P41212 452 aa10.53□□□□□ -0.72
LINC00540-202ENST00000616974 FXYD3Q14802 87 aa10.53□□□□□ -0.72
LINC00540-202ENST00000616974 CHPT1Q8WUD6 406 aa10.53□□□□□ -0.72
LINC00540-202ENST00000616974 ADTRPQ96IZ2 230 aa10.53□□□□□ -0.72
LINC00540-202ENST00000616974 OR5B12Q96R08 314 aa10.53□□□□□ -0.72
LINC00540-202ENST00000616974 NSG2Q9Y328 171 aa10.53□□□□□ -0.72
LINC00540-202ENST00000616974 PRELID3BQ9Y3B1 194 aa10.53□□□□□ -0.72
LINC00540-202ENST00000616974 TRAV41A0A0B4J266 112 aa10.52□□□□□ -0.72
LINC00540-202ENST00000616974 LINC00854A0A1B0GVQ3 168 aa10.52□□□□□ -0.72
LINC00540-202ENST00000616974 A0A1W2PN81 502 aa10.52□□□□□ -0.72
LINC00540-202ENST00000616974 TCRBV4S1A1TA0A5B7 111 aa10.52□□□□□ -0.72
LINC00540-202ENST00000616974 DBX1A6NMT0 343 aa10.52□□□□□ -0.72
LINC00540-202ENST00000616974 SLC22A5O76082 557 aa10.52□□□□□ -0.72
LINC00540-202ENST00000616974 IFNA6P05013 189 aa10.52□□□□□ -0.72
LINC00540-202ENST00000616974 CHRNA7P36544 502 aa10.52□□□□□ -0.72
LINC00540-202ENST00000616974 LGALS7P47929 136 aa10.52□□□□□ -0.72
LINC00540-202ENST00000616974 UBE2KP61086 200 aa10.52□□□□□ -0.72
LINC00540-202ENST00000616974 MRPS10P82664 201 aaKnown RBP10.52□□□□□ -0.72
LINC00540-202ENST00000616974 KIAA0141Q14154 515 aaPredicted RBP10.52□□□□□ -0.72
LINC00540-202ENST00000616974 TNXAQ16473 311 aa10.52□□□□□ -0.72
LINC00540-202ENST00000616974 PRSS8Q16651 343 aa10.52□□□□□ -0.72
LINC00540-202ENST00000616974 SP6Q3SY56 376 aa10.52□□□□□ -0.72
LINC00540-202ENST00000616974 ZNF562Q6V9R5 426 aa10.52□□□□□ -0.72
LINC00540-202ENST00000616974 C8orf86Q6ZUL3 223 aa10.52□□□□□ -0.72
LINC00540-202ENST00000616974 OR4S2Q8NH73 311 aa10.52□□□□□ -0.72
LINC00540-202ENST00000616974 OSR1Q8TAX0 266 aaPredicted RBP10.52□□□□□ -0.72
LINC00540-202ENST00000616974 ARPC1AQ92747 370 aa10.52□□□□□ -0.72
LINC00540-202ENST00000616974 TP53RKQ96S44 253 aa10.52□□□□□ -0.72
LINC00540-202ENST00000616974 RNF5Q99942 180 aa10.52□□□□□ -0.72
LINC00540-202ENST00000616974 RTBDNQ9BSG5 229 aaPredicted RBP10.52□□□□□ -0.72
LINC00540-202ENST00000616974 ALX4Q9H161 411 aaPredicted RBP10.52□□□□□ -0.72
LINC00540-202ENST00000616974 C5orf66Q9H5L9 145 aa10.52□□□□□ -0.72
LINC00540-202ENST00000616974 NUBP2Q9Y5Y2 271 aa10.52□□□□□ -0.72
LINC00540-202ENST00000616974 HMX3A6NHT5 357 aa10.52□□□□□ -0.73
LINC00540-202ENST00000616974 CGB1A6NKQ9 187 aa10.52□□□□□ -0.73
LINC00540-202ENST00000616974 SPDEFO95238 335 aa10.52□□□□□ -0.73
LINC00540-202ENST00000616974 PRH1P02810 166 aa10.52□□□□□ -0.73
LINC00540-202ENST00000616974 CSF1P09603 554 aa10.52□□□□□ -0.73
LINC00540-202ENST00000616974 AKAIN1P0CW23 69 aa10.52□□□□□ -0.73
LINC00540-202ENST00000616974 PGAM2P15259 253 aa10.52□□□□□ -0.73
LINC00540-202ENST00000616974 PSMB8P28062 276 aa10.52□□□□□ -0.73
LINC00540-202ENST00000616974 G6PCP35575 357 aa10.52□□□□□ -0.73
LINC00540-202ENST00000616974 OR4A47Q6IF82 309 aa10.52□□□□□ -0.73
LINC00540-202ENST00000616974 PUSL1Q8N0Z8 303 aaKnown RBP10.52□□□□□ -0.73
LINC00540-202ENST00000616974 ARRDC1Q8N5I2 433 aa10.52□□□□□ -0.73
LINC00540-202ENST00000616974 OR5T1Q8NG75 326 aa10.52□□□□□ -0.73
LINC00540-202ENST00000616974 TERB2Q8NHR7 220 aa10.52□□□□□ -0.73
LINC00540-202ENST00000616974 R3HDM4Q96D70 268 aa10.52□□□□□ -0.73
LINC00540-202ENST00000616974 MS4A10Q96PG2 267 aa10.52□□□□□ -0.73
LINC00540-202ENST00000616974 MCUBQ9NWR8 336 aa10.52□□□□□ -0.73
LINC00540-202ENST00000616974 NDUFA13Q9P0J0 144 aa10.52□□□□□ -0.73
LINC00540-202ENST00000616974 KCNAB3O43448 404 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 LPAR6P43657 344 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 PIGPP57054 158 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 PRR31Q5SQ13 230 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 MINDY2Q8NBR6 621 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 ADAD2Q8NCV1 583 aaKnown RBP10.51□□□□□ -0.73
LINC00540-202ENST00000616974 GNB4Q9HAV0 340 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 HRASLSQ9HDD0 168 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 VSIG4Q9Y279 399 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 COL7A1Q02388 2944 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 SORL1Q92673 2214 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 MSGN1A6NI15 193 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms