RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 ALG5Q9Y673 324 aa11.97□□□□□ -0.49
TRIM28-207ENST00000597136 TMEM89A2RUT3 159 aa11.96□□□□□ -0.49
TRIM28-207ENST00000597136 H7C2Y5 167 aa11.96□□□□□ -0.49
TRIM28-207ENST00000597136 CREBL2O60519 120 aaPredicted RBP11.96□□□□□ -0.49
TRIM28-207ENST00000597136 IGKV1-16P04430 117 aa11.96□□□□□ -0.49
TRIM28-207ENST00000597136 CRYBA1P05813 215 aa11.96□□□□□ -0.49
TRIM28-207ENST00000597136 SNRNP70P08621 437 aaKnown RBP11.96□□□□□ -0.49
TRIM28-207ENST00000597136 RRASP10301 218 aa11.96□□□□□ -0.49
TRIM28-207ENST00000597136 CD1BP29016 333 aa11.96□□□□□ -0.49
TRIM28-207ENST00000597136 HNF4GQ14541 408 aa11.96□□□□□ -0.49
TRIM28-207ENST00000597136 OR4S2Q8NH73 311 aa11.96□□□□□ -0.49
TRIM28-207ENST00000597136 MITD1Q8WV92 249 aa11.96□□□□□ -0.49
TRIM28-207ENST00000597136 WASHC3Q9Y3C0 194 aa11.96□□□□□ -0.49
TRIM28-207ENST00000597136 CDS2O95674 445 aa11.96□□□□□ -0.5
TRIM28-207ENST00000597136 LPAR6P43657 344 aa11.96□□□□□ -0.5
TRIM28-207ENST00000597136 ARHGDIBP52566 201 aa11.96□□□□□ -0.5
TRIM28-207ENST00000597136 CBX3Q13185 183 aa11.96□□□□□ -0.5
TRIM28-207ENST00000597136 DHRS7BQ6IAN0 325 aaPredicted RBP11.96□□□□□ -0.5
TRIM28-207ENST00000597136 LIAT1Q6ZQX7 453 aa11.96□□□□□ -0.5
TRIM28-207ENST00000597136 Q6ZS46 218 aa11.96□□□□□ -0.5
TRIM28-207ENST00000597136 Q6ZSV7 163 aa11.96□□□□□ -0.5
TRIM28-207ENST00000597136 PDPNQ86YL7 162 aa11.96□□□□□ -0.5
TRIM28-207ENST00000597136 LHFPL5Q8TAF8 219 aa11.96□□□□□ -0.5
TRIM28-207ENST00000597136 TMEM56Q96MV1 263 aa11.96□□□□□ -0.5
TRIM28-207ENST00000597136 OR51J1Q9H342 316 aa11.96□□□□□ -0.5
TRIM28-207ENST00000597136 TMEM56-RWDD3S4R434 201 aa11.96□□□□□ -0.5
TRIM28-207ENST00000597136 CRYZL1O95825 349 aa11.95□□□□□ -0.5
TRIM28-207ENST00000597136 IGKV1D-33P01593 117 aa11.95□□□□□ -0.5
TRIM28-207ENST00000597136 IGKV1-33P01594 117 aa11.95□□□□□ -0.5
TRIM28-207ENST00000597136 IGKV1-39P01597 117 aa11.95□□□□□ -0.5
TRIM28-207ENST00000597136 IGKV1D-39P04432 117 aa11.95□□□□□ -0.5
TRIM28-207ENST00000597136 RPA2P15927 270 aa11.95□□□□□ -0.5
TRIM28-207ENST00000597136 MDKP21741 143 aaPredicted RBP11.95□□□□□ -0.5
TRIM28-207ENST00000597136 BLCAPP62952 87 aa11.95□□□□□ -0.5
TRIM28-207ENST00000597136 SRPXP78539 464 aa11.95□□□□□ -0.5
TRIM28-207ENST00000597136 LGI3Q8N145 548 aa11.95□□□□□ -0.5
TRIM28-207ENST00000597136 C12orf45Q8N5I9 185 aaPredicted RBP11.95□□□□□ -0.5
TRIM28-207ENST00000597136 PHB2Q99623 299 aa11.95□□□□□ -0.5
TRIM28-207ENST00000597136 PLEKHA2Q9HB19 425 aa11.95□□□□□ -0.5
TRIM28-207ENST00000597136 A0A0B4J2A0 478 aa11.94□□□□□ -0.5
TRIM28-207ENST00000597136 S1PR2O95136 353 aa11.94□□□□□ -0.5
TRIM28-207ENST00000597136 HPRT1P00492 218 aa11.94□□□□□ -0.5
TRIM28-207ENST00000597136 HES1Q14469 280 aa11.94□□□□□ -0.5
TRIM28-207ENST00000597136 LIN54Q6MZP7 749 aa11.94□□□□□ -0.5
TRIM28-207ENST00000597136 THNSL2Q86YJ6 484 aa11.94□□□□□ -0.5
TRIM28-207ENST00000597136 SELENOHQ8IZQ5 122 aaKnown RBP11.94□□□□□ -0.5
TRIM28-207ENST00000597136 LRTM2Q8N967 370 aa11.94□□□□□ -0.5
TRIM28-207ENST00000597136 OR4C13Q8NGP0 309 aa11.94□□□□□ -0.5
TRIM28-207ENST00000597136 COQ8AQ8NI60 647 aa11.94□□□□□ -0.5
TRIM28-207ENST00000597136 RBPMSQ93062 196 aaKnown RBP11.94□□□□□ -0.5
TRIM28-207ENST00000597136 FLYWCH2Q96CP2 140 aaKnown RBP11.94□□□□□ -0.5
TRIM28-207ENST00000597136 RITA1Q96K30 269 aa11.94□□□□□ -0.5
TRIM28-207ENST00000597136 SHPKQ9UHJ6 478 aa11.94□□□□□ -0.5
TRIM28-207ENST00000597136 PITPNC1Q9UKF7 332 aa11.94□□□□□ -0.5
TRIM28-207ENST00000597136 SIGLEC9Q9Y336 463 aa11.94□□□□□ -0.5
TRIM28-207ENST00000597136 WNK1Q9H4A3 2382 aa11.94□□□□□ -0.5
TRIM28-207ENST00000597136 A0A1B0GVG6 124 aa11.93□□□□□ -0.5
TRIM28-207ENST00000597136 SH2D7A6NKC9 451 aaPredicted RBP11.93□□□□□ -0.5
TRIM28-207ENST00000597136 FAM106CPP0CH98 169 aa11.93□□□□□ -0.5
TRIM28-207ENST00000597136 EBI3Q14213 229 aa11.93□□□□□ -0.5
TRIM28-207ENST00000597136 TMEM177Q53S58 311 aa11.93□□□□□ -0.5
TRIM28-207ENST00000597136 TMEM268Q5VZI3 342 aa11.93□□□□□ -0.5
TRIM28-207ENST00000597136 ZNF695Q8IW36 515 aa11.93□□□□□ -0.5
TRIM28-207ENST00000597136 UXS1Q8NBZ7 420 aa11.93□□□□□ -0.5
TRIM28-207ENST00000597136 IL22RA2Q969J5 263 aa11.93□□□□□ -0.5
TRIM28-207ENST00000597136 EAF1Q96JC9 268 aaPredicted RBP11.93□□□□□ -0.5
TRIM28-207ENST00000597136 RBM14Q96PK6 669 aaKnown RBP11.93□□□□□ -0.5
TRIM28-207ENST00000597136 SLC25A33Q9BSK2 321 aa11.93□□□□□ -0.5
TRIM28-207ENST00000597136 DBX1A6NMT0 343 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 SRRM4A7MD48 611 aaKnown RBP11.92□□□□□ -0.5
TRIM28-207ENST00000597136 SSNA1O43805 119 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 TSPAN9O75954 239 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 MOSP00540 346 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 AMY1AP04745 511 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 RPL15P61313 204 aaKnown RBP11.92□□□□□ -0.5
TRIM28-207ENST00000597136 RPS16P62249 146 aaKnown RBP11.92□□□□□ -0.5
TRIM28-207ENST00000597136 AWAT1Q58HT5 328 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 LYZL2Q7Z4W2 148 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 LINC01006Q8NI28 216 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 OSR1Q8TAX0 266 aaPredicted RBP11.92□□□□□ -0.5
TRIM28-207ENST00000597136 SEC22AQ96IW7 307 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 COMMD9Q9P000 198 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 PKD1L1Q8TDX9 2849 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 SHOXO15266 292 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 OR2F2O95006 317 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 NDUFA7O95182 113 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 HRASP01112 189 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 KRASP01116 189 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 TMEM11P17152 192 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 G6PCP35575 357 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 FOXL1Q12952 345 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 Q8N6K4 173 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 SLC35G3Q8N808 338 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 OR2T10Q8NGZ9 312 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 R3HDM4Q96D70 268 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 HARBI1Q96MB7 349 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 RNF5Q99942 180 aa11.92□□□□□ -0.5
TRIM28-207ENST00000597136 TET2Q6N021 2002 aaPredicted RBP11.91□□□□□ -0.5
TRIM28-207ENST00000597136 hCG_2014768A0A024R1R8 64 aa11.91□□□□□ -0.5
TRIM28-207ENST00000597136 PIGBOS1A0A0B4J2F0 54 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms