RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 ANKRD13BQ86YJ7 626 aa11.7□□□□□ -0.54
TRIM28-205ENST00000595028 OR5AP2Q8NGF4 316 aa11.7□□□□□ -0.54
TRIM28-205ENST00000595028 OR4S2Q8NH73 311 aa11.7□□□□□ -0.54
TRIM28-205ENST00000595028 MRPS26Q9BYN8 205 aaKnown RBP11.7□□□□□ -0.54
TRIM28-205ENST00000595028 ALX4Q9H161 411 aaPredicted RBP11.7□□□□□ -0.54
TRIM28-205ENST00000595028 COMMD3Q9UBI1 195 aa11.7□□□□□ -0.54
TRIM28-205ENST00000595028 H3BUA1 57 aa11.69□□□□□ -0.54
TRIM28-205ENST00000595028 K7EIL1 84 aa11.69□□□□□ -0.54
TRIM28-205ENST00000595028 CREBL2O60519 120 aaPredicted RBP11.69□□□□□ -0.54
TRIM28-205ENST00000595028 APOA1P02647 267 aa11.69□□□□□ -0.54
TRIM28-205ENST00000595028 TNXAQ16473 311 aa11.69□□□□□ -0.54
TRIM28-205ENST00000595028 SRSF12Q8WXF0 261 aaKnown RBP11.69□□□□□ -0.54
TRIM28-205ENST00000595028 ACOT12Q8WYK0 555 aa11.69□□□□□ -0.54
TRIM28-205ENST00000595028 TMEM68Q96MH6 324 aa11.69□□□□□ -0.54
TRIM28-205ENST00000595028 CMTM3Q96MX0 182 aa11.69□□□□□ -0.54
TRIM28-205ENST00000595028 MS4A10Q96PG2 267 aa11.69□□□□□ -0.54
TRIM28-205ENST00000595028 DCUN1D5Q9BTE7 237 aa11.69□□□□□ -0.54
TRIM28-205ENST00000595028 CCL28Q9NRJ3 127 aa11.69□□□□□ -0.54
TRIM28-205ENST00000595028 SEC14L6B5MCN3 397 aa11.68□□□□□ -0.54
TRIM28-205ENST00000595028 IGHV3-11P01762 117 aa11.68□□□□□ -0.54
TRIM28-205ENST00000595028 TRGV3P03979 118 aa11.68□□□□□ -0.54
TRIM28-205ENST00000595028 PRSS3P35030 304 aa11.68□□□□□ -0.54
TRIM28-205ENST00000595028 KIR2DS2P43631 304 aa11.68□□□□□ -0.54
TRIM28-205ENST00000595028 FXYD4P59646 89 aa11.68□□□□□ -0.54
TRIM28-205ENST00000595028 C9orf66Q5T8R8 295 aa11.68□□□□□ -0.54
TRIM28-205ENST00000595028 C11orf87Q6NUJ2 197 aa11.68□□□□□ -0.54
TRIM28-205ENST00000595028 TMEM17Q86X19 198 aa11.68□□□□□ -0.54
TRIM28-205ENST00000595028 MFSD4AQ8N468 514 aa11.68□□□□□ -0.54
TRIM28-205ENST00000595028 ZBTB34Q8NCN2 500 aa11.68□□□□□ -0.54
TRIM28-205ENST00000595028 OR5T1Q8NG75 326 aa11.68□□□□□ -0.54
TRIM28-205ENST00000595028 GIMAP1Q8WWP7 306 aa11.68□□□□□ -0.54
TRIM28-205ENST00000595028 GPHA2Q96T91 129 aa11.68□□□□□ -0.54
TRIM28-205ENST00000595028 SLC5A7Q9GZV3 580 aa11.68□□□□□ -0.54
TRIM28-205ENST00000595028 ZNF430Q9H8G1 570 aaPredicted RBP11.68□□□□□ -0.54
TRIM28-205ENST00000595028 EHFQ9NZC4 300 aa11.68□□□□□ -0.54
TRIM28-205ENST00000595028 DYNC2H1Q8NCM8 4307 aaKnown RBP11.67□□□□□ -0.54
TRIM28-205ENST00000595028 IGHV4OR15-8A0A075B7B6 117 aa11.67□□□□□ -0.54
TRIM28-205ENST00000595028 A0A087WW49 117 aa11.67□□□□□ -0.54
TRIM28-205ENST00000595028 WI2-2373I1.2A0A1W2PRP0 233 aa11.67□□□□□ -0.54
TRIM28-205ENST00000595028 LINC01619G3V211 115 aa11.67□□□□□ -0.54
TRIM28-205ENST00000595028 TNFSF12O43508 249 aa11.67□□□□□ -0.54
TRIM28-205ENST00000595028 BRI3O95415 125 aa11.67□□□□□ -0.54
TRIM28-205ENST00000595028 NAT1P18440 290 aa11.67□□□□□ -0.54
TRIM28-205ENST00000595028 ALDH3B2P48448 385 aa11.67□□□□□ -0.54
TRIM28-205ENST00000595028 RORCP51449 518 aa11.67□□□□□ -0.54
TRIM28-205ENST00000595028 BRWD1-AS2P59051 145 aa11.67□□□□□ -0.54
TRIM28-205ENST00000595028 TAS2R46P59540 309 aa11.67□□□□□ -0.54
TRIM28-205ENST00000595028 HERV-K104P61576 105 aa11.67□□□□□ -0.54
TRIM28-205ENST00000595028 GPR107Q5VW38 600 aa11.67□□□□□ -0.54
TRIM28-205ENST00000595028 MMD2Q8IY49 270 aa11.67□□□□□ -0.54
TRIM28-205ENST00000595028 VKORC1L1Q8N0U8 176 aa11.67□□□□□ -0.54
TRIM28-205ENST00000595028 AP3S1Q92572 193 aa11.67□□□□□ -0.54
TRIM28-205ENST00000595028 PHB2Q99623 299 aa11.67□□□□□ -0.54
TRIM28-205ENST00000595028 ZNF355PQ9NSJ1 428 aa11.67□□□□□ -0.54
TRIM28-205ENST00000595028 SMIM31A0A1B0GVY4 71 aa11.66□□□□□ -0.54
TRIM28-205ENST00000595028 RBFOX2O43251 390 aaKnown RBP eCLIP11.66□□□□□ -0.54
TRIM28-205ENST00000595028 HPGDSO60760 199 aa11.66□□□□□ -0.54
TRIM28-205ENST00000595028 ACTL6BO94805 426 aa11.66□□□□□ -0.54
TRIM28-205ENST00000595028 APELAP0DMC3 54 aa11.66□□□□□ -0.54
TRIM28-205ENST00000595028 ELK1P19419 428 aa11.66□□□□□ -0.54
TRIM28-205ENST00000595028 SLURP1P55000 103 aa11.66□□□□□ -0.54
TRIM28-205ENST00000595028 DGCR2P98153 550 aa11.66□□□□□ -0.54
TRIM28-205ENST00000595028 CATR1Q13166 79 aa11.66□□□□□ -0.54
TRIM28-205ENST00000595028 DYRK1AQ13627 763 aa11.66□□□□□ -0.54
TRIM28-205ENST00000595028 C10orf55Q5SWW7 151 aa11.66□□□□□ -0.54
TRIM28-205ENST00000595028 GPR141Q7Z602 305 aa11.66□□□□□ -0.54
TRIM28-205ENST00000595028 OR5H2Q8NGV7 314 aa11.66□□□□□ -0.54
TRIM28-205ENST00000595028 VSTM2AQ8TAG5 236 aa11.66□□□□□ -0.54
TRIM28-205ENST00000595028 GPX8Q8TED1 209 aa11.66□□□□□ -0.54
TRIM28-205ENST00000595028 RHOVQ96L33 236 aa11.66□□□□□ -0.54
TRIM28-205ENST00000595028 TINAGL1Q9GZM7 467 aaPredicted RBP11.66□□□□□ -0.54
TRIM28-205ENST00000595028 SCPEP1Q9HB40 452 aa11.66□□□□□ -0.54
TRIM28-205ENST00000595028 ZMAT5Q9UDW3 170 aaKnown RBP11.66□□□□□ -0.54
TRIM28-205ENST00000595028 MSGN1A6NI15 193 aa11.65□□□□□ -0.54
TRIM28-205ENST00000595028 OVOL1O14753 267 aa11.65□□□□□ -0.54
TRIM28-205ENST00000595028 MPPED1O15442 326 aa11.65□□□□□ -0.54
TRIM28-205ENST00000595028 RAMP3O60896 148 aa11.65□□□□□ -0.54
TRIM28-205ENST00000595028 KBTBD11O94819 623 aa11.65□□□□□ -0.54
TRIM28-205ENST00000595028 OR2A4O95047 310 aa11.65□□□□□ -0.54
TRIM28-205ENST00000595028 PMP2P02689 132 aa11.65□□□□□ -0.54
TRIM28-205ENST00000595028 RFX2P48378 723 aa11.65□□□□□ -0.54
TRIM28-205ENST00000595028 MZT2AQ6P582 158 aa11.65□□□□□ -0.54
TRIM28-205ENST00000595028 ZNF818PQ6ZRF7 136 aa11.65□□□□□ -0.54
TRIM28-205ENST00000595028 SNX29P2Q8IUI4 249 aa11.65□□□□□ -0.54
TRIM28-205ENST00000595028 SPAG16Q8N0X2 631 aa11.65□□□□□ -0.54
TRIM28-205ENST00000595028 PUSL1Q8N0Z8 303 aaKnown RBP11.65□□□□□ -0.54
TRIM28-205ENST00000595028 ADAD2Q8NCV1 583 aaKnown RBP11.65□□□□□ -0.54
TRIM28-205ENST00000595028 DCUN1D4Q92564 292 aa11.65□□□□□ -0.54
TRIM28-205ENST00000595028 BORCS5Q969J3 196 aa11.65□□□□□ -0.54
TRIM28-205ENST00000595028 MOB3AQ96BX8 217 aa11.65□□□□□ -0.54
TRIM28-205ENST00000595028 OR2A7Q96R45 310 aa11.65□□□□□ -0.54
TRIM28-205ENST00000595028 FXYD6Q9H0Q3 95 aa11.65□□□□□ -0.54
TRIM28-205ENST00000595028 COA4Q9NYJ1 87 aa11.65□□□□□ -0.54
TRIM28-205ENST00000595028 ADAM30Q9UKF2 790 aa11.65□□□□□ -0.54
TRIM28-205ENST00000595028 SORL1Q92673 2214 aa11.64□□□□□ -0.55
TRIM28-205ENST00000595028 A0A0G2JLM5 398 aa11.64□□□□□ -0.55
TRIM28-205ENST00000595028 C13orf42A0A1B0GVH6 325 aa11.64□□□□□ -0.55
TRIM28-205ENST00000595028 SULT1C2O00338 296 aa11.64□□□□□ -0.55
TRIM28-205ENST00000595028 HRASP01112 189 aa11.64□□□□□ -0.55
TRIM28-205ENST00000595028 HSPB1P04792 205 aaKnown RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms