RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 RAG2P55895 527 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 LINC00205P59089 165 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 UBE2MP61081 183 aaKnown RBP4.28□□□□□ -1.72
LIG3-210ENST00000588109 RND3P61587 244 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 SRSF2Q01130 221 aaKnown RBP4.28□□□□□ -1.72
LIG3-210ENST00000588109 ZNF816Q0VGE8 651 aaPredicted RBP4.28□□□□□ -1.72
LIG3-210ENST00000588109 DHRS2Q13268 280 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 PPP1R1AQ13522 171 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 TATDN3Q17R31 274 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 RTL8BQ17RB0 113 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 SP6Q3SY56 376 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 KLF17Q5JT82 389 aaPredicted RBP4.28□□□□□ -1.72
LIG3-210ENST00000588109 FAM120AOSQ5T036 256 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 CLEC9AQ6UXN8 241 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 IL17RELQ6ZVW7 336 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 LYG2Q86SG7 212 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 SPAG16Q8N0X2 631 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 UXS1Q8NBZ7 420 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 COQ8AQ8NI60 647 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 RNASE11Q8TAA1 199 aaKnown RBP4.28□□□□□ -1.72
LIG3-210ENST00000588109 C22orf15Q8WYQ4 148 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 TMEM230Q96A57 120 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 MALSU1Q96EH3 234 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 C5orf30Q96GV9 206 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 PHB2Q99623 299 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 SMR3AQ99954 134 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 ZNF251Q9BRH9 671 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 SEC22CQ9BRL7 303 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 ALX4Q9H161 411 aaPredicted RBP4.28□□□□□ -1.72
LIG3-210ENST00000588109 SLC35D1Q9NTN3 355 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 NUP50Q9UKX7 468 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 WNK2Q9Y3S1 2297 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 NOTCH2Q04721 2471 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 ITPR3Q14573 2671 aa4.28□□□□□ -1.73
LIG3-210ENST00000588109 MED13LQ71F56 2210 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 CREBBPQ92793 2442 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 FLNBO75369 2602 aaKnown RBP4.27□□□□□ -1.73
LIG3-210ENST00000588109 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.27□□□□□ -1.73
LIG3-210ENST00000588109 IGHV3-72A0A0B4J1Y9 119 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 PIGBOS1A0A0B4J2F0 54 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 A0A1W2PPI3 338 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 LINC00473A8K010 186 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 SNRPGP15A8MWD9 76 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 H0YJW9 148 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 LY6LH3BQJ8 138 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 TIMM23O14925 209 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 RAMP3O60896 148 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 PROP1O75360 226 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 ATG12O94817 140 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 SFT2D2O95562 160 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 DUS4LO95620 317 aaKnown RBP4.27□□□□□ -1.73
LIG3-210ENST00000588109 CRYZL1O95825 349 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 LY6G6DO95868 133 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 RRASP10301 218 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 PAX6P26367 422 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 MC5RP33032 325 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 LPAR6P43657 344 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 ERVK-16P61578 105 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 RPL30P62888 115 aaKnown RBP4.27□□□□□ -1.73
LIG3-210ENST00000588109 SRPXP78539 464 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 DHODHQ02127 395 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 KRTAP1-1Q07627 177 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 FOXE3Q13461 319 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 EIF4EBP1Q13541 118 aaPredicted RBP4.27□□□□□ -1.73
LIG3-210ENST00000588109 HES1Q14469 280 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 LDLRAD2Q5SZI1 272 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 TMEM268Q5VZI3 342 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 LIN54Q6MZP7 749 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 PDPNQ86YL7 162 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 ZNF695Q8IW36 515 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 LGI3Q8N145 548 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 OR8H3Q8N146 312 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 C12orf45Q8N5I9 185 aaPredicted RBP4.27□□□□□ -1.73
LIG3-210ENST00000588109 TCTEX1D1Q8N7M0 179 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 ZNF383Q8NA42 475 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 OR52B4Q8NGK2 314 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 OR4S2Q8NH73 311 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 CD300LFQ8TDQ1 290 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 ZNF431Q8TF32 576 aaPredicted RBP4.27□□□□□ -1.73
LIG3-210ENST00000588109 C17orf50Q8WW18 174 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 ST6GALNAC6Q969X2 333 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 FLYWCH2Q96CP2 140 aaKnown RBP4.27□□□□□ -1.73
LIG3-210ENST00000588109 TP53RKQ96S44 253 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 NABP2Q9BQ15 211 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 TMEM222Q9H0R3 208 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 OR51J1Q9H342 316 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 WASHC3Q9Y3C0 194 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 ALG5Q9Y673 324 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 MYO9AB2RTY4 2548 aa4.27□□□□□ -1.73
LIG3-210ENST00000588109 AKAP9Q99996 3911 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 A0A0B4J293 547 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 MDFIC2A0A1B0GVS7 189 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 C7orf66A4D0T2 115 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 BTBD17A6NE02 478 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 PGPEP1LA6NFU8 196 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 CYSRT1A8MQ03 144 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 RBFOX2O43251 390 aaKnown RBP eCLIP4.26□□□□□ -1.73
LIG3-210ENST00000588109 S1PR2O95136 353 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 HPRT1P00492 218 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 HRASP01112 189 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms