RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 SOX21Q9Y651 276 aaPredicted RBP12.95□□□□□ -0.34
SS18-211ENST00000578954 SRRM4A7MD48 611 aaKnown RBP12.94□□□□□ -0.34
SS18-211ENST00000578954 GOSR2O14653 212 aa12.94□□□□□ -0.34
SS18-211ENST00000578954 SPDEFO95238 335 aa12.94□□□□□ -0.34
SS18-211ENST00000578954 MOSP00540 346 aa12.94□□□□□ -0.34
SS18-211ENST00000578954 IFNA21P01568 189 aa12.94□□□□□ -0.34
SS18-211ENST00000578954 SNRNP70P08621 437 aaKnown RBP12.94□□□□□ -0.34
SS18-211ENST00000578954 HOXB5P09067 269 aa12.94□□□□□ -0.34
SS18-211ENST00000578954 SLC25A6P12236 298 aa12.94□□□□□ -0.34
SS18-211ENST00000578954 CXCL3P19876 107 aa12.94□□□□□ -0.34
SS18-211ENST00000578954 PUSL1Q8N0Z8 303 aaKnown RBP12.94□□□□□ -0.34
SS18-211ENST00000578954 OR2T10Q8NGZ9 312 aa12.94□□□□□ -0.34
SS18-211ENST00000578954 PIFOQ8TCI5 191 aa12.94□□□□□ -0.34
SS18-211ENST00000578954 RHOVQ96L33 236 aa12.94□□□□□ -0.34
SS18-211ENST00000578954 SMR3AQ99954 134 aa12.94□□□□□ -0.34
SS18-211ENST00000578954 FAM96BQ9Y3D0 163 aa12.94□□□□□ -0.34
SS18-211ENST00000578954 SONP18583 2426 aaKnown RBP12.93□□□□□ -0.34
SS18-211ENST00000578954 CCSO14618 274 aa12.93□□□□□ -0.34
SS18-211ENST00000578954 SHOXO15266 292 aa12.93□□□□□ -0.34
SS18-211ENST00000578954 OR2A4O95047 310 aa12.93□□□□□ -0.34
SS18-211ENST00000578954 KRASP01116 189 aa12.93□□□□□ -0.34
SS18-211ENST00000578954 IGKV1D-33P01593 117 aa12.93□□□□□ -0.34
SS18-211ENST00000578954 IGKV1-33P01594 117 aa12.93□□□□□ -0.34
SS18-211ENST00000578954 G6PCP35575 357 aa12.93□□□□□ -0.34
SS18-211ENST00000578954 AKR1C2P52895 323 aa12.93□□□□□ -0.34
SS18-211ENST00000578954 H2BFSP57053 126 aa12.93□□□□□ -0.34
SS18-211ENST00000578954 ERVK-16P61578 105 aa12.93□□□□□ -0.34
SS18-211ENST00000578954 LRRC75BQ2VPJ9 315 aa12.93□□□□□ -0.34
SS18-211ENST00000578954 DEFB112Q30KQ8 113 aa12.93□□□□□ -0.34
SS18-211ENST00000578954 BCL6BQ8N143 479 aaPredicted RBP12.93□□□□□ -0.34
SS18-211ENST00000578954 ASB13Q8WXK3 278 aa12.93□□□□□ -0.34
SS18-211ENST00000578954 GPR146Q96CH1 333 aa12.93□□□□□ -0.34
SS18-211ENST00000578954 RBMXL1Q96E39 390 aaKnown RBP12.93□□□□□ -0.34
SS18-211ENST00000578954 RRNAD1Q96FB5 475 aaKnown RBP12.93□□□□□ -0.34
SS18-211ENST00000578954 EAF1Q96JC9 268 aaPredicted RBP12.93□□□□□ -0.34
SS18-211ENST00000578954 OR2A7Q96R45 310 aa12.93□□□□□ -0.34
SS18-211ENST00000578954 COA4Q9NYJ1 87 aa12.93□□□□□ -0.34
SS18-211ENST00000578954 BET1LQ9NYM9 111 aa12.93□□□□□ -0.34
SS18-211ENST00000578954 ANK3Q12955 4377 aaKnown RBP12.92□□□□□ -0.34
SS18-211ENST00000578954 HIVEP1P15822 2718 aa12.92□□□□□ -0.34
SS18-211ENST00000578954 CELSR1Q9NYQ6 3014 aa12.92□□□□□ -0.34
SS18-211ENST00000578954 MPTX1A8MV57 137 aa12.92□□□□□ -0.34
SS18-211ENST00000578954 NDUFA3O95167 84 aa12.92□□□□□ -0.34
SS18-211ENST00000578954 CRYGBP07316 175 aa12.92□□□□□ -0.34
SS18-211ENST00000578954 FGF2P09038 288 aa12.92□□□□□ -0.34
SS18-211ENST00000578954 FAM106CPP0CH98 169 aa12.92□□□□□ -0.34
SS18-211ENST00000578954 SAA1P0DJI8 122 aaPredicted RBP12.92□□□□□ -0.34
SS18-211ENST00000578954 HNF1AP20823 631 aa12.92□□□□□ -0.34
SS18-211ENST00000578954 UBE2KP61086 200 aa12.92□□□□□ -0.34
SS18-211ENST00000578954 RPS16P62249 146 aaKnown RBP12.92□□□□□ -0.34
SS18-211ENST00000578954 AARDQ4LEZ3 155 aa12.92□□□□□ -0.34
SS18-211ENST00000578954 FBLN7Q53RD9 439 aa12.92□□□□□ -0.34
SS18-211ENST00000578954 GSG1LQ6UXU4 331 aa12.92□□□□□ -0.34
SS18-211ENST00000578954 NPBQ8NG41 125 aa12.92□□□□□ -0.34
SS18-211ENST00000578954 RITA1Q96K30 269 aa12.92□□□□□ -0.34
SS18-211ENST00000578954 OR10C1Q96KK4 312 aa12.92□□□□□ -0.34
SS18-211ENST00000578954 TSNAXQ99598 290 aaKnown RBP12.92□□□□□ -0.34
SS18-211ENST00000578954 SPIN2AQ99865 258 aa12.92□□□□□ -0.34
SS18-211ENST00000578954 SPIN2BQ9BPZ2 258 aa12.92□□□□□ -0.34
SS18-211ENST00000578954 TMEM140Q9NV12 185 aa12.92□□□□□ -0.34
SS18-211ENST00000578954 SVEP1Q4LDE5 3571 aa12.91□□□□□ -0.34
SS18-211ENST00000578954 A0A1B0GU03 582 aa12.91□□□□□ -0.34
SS18-211ENST00000578954 PITX3O75364 302 aa12.91□□□□□ -0.34
SS18-211ENST00000578954 GIPP09681 153 aaPredicted RBP12.91□□□□□ -0.34
SS18-211ENST00000578954 IL15RAQ13261 267 aa12.91□□□□□ -0.34
SS18-211ENST00000578954 VMA21Q3ZAQ7 101 aa12.91□□□□□ -0.34
SS18-211ENST00000578954 OR4A47Q6IF82 309 aa12.91□□□□□ -0.34
SS18-211ENST00000578954 H2BFWTQ7Z2G1 175 aa12.91□□□□□ -0.34
SS18-211ENST00000578954 TEX45Q8NA69 505 aa12.91□□□□□ -0.34
SS18-211ENST00000578954 DMBX1Q8NFW5 382 aa12.91□□□□□ -0.34
SS18-211ENST00000578954 OR8H1Q8NGG4 311 aa12.91□□□□□ -0.34
SS18-211ENST00000578954 OR4A5Q8NH83 315 aa12.91□□□□□ -0.34
SS18-211ENST00000578954 VSTM2AQ8TAG5 236 aa12.91□□□□□ -0.34
SS18-211ENST00000578954 C2orf50Q96LR7 162 aa12.91□□□□□ -0.34
SS18-211ENST00000578954 SSX3Q99909 188 aa12.91□□□□□ -0.34
SS18-211ENST00000578954 ZNF436Q9C0F3 470 aaPredicted RBP12.91□□□□□ -0.34
SS18-211ENST00000578954 HIVEP2P31629 2446 aa12.91□□□□□ -0.34
SS18-211ENST00000578954 MDFIC2A0A1B0GVS7 189 aa12.9□□□□□ -0.34
SS18-211ENST00000578954 SIX6O95475 246 aa12.9□□□□□ -0.34
SS18-211ENST00000578954 CD24P25063 80 aa12.9□□□□□ -0.34
SS18-211ENST00000578954 SMCO1Q147U7 214 aa12.9□□□□□ -0.34
SS18-211ENST00000578954 PSG5Q15238 335 aa12.9□□□□□ -0.34
SS18-211ENST00000578954 IAH1Q2TAA2 248 aaPredicted RBP12.9□□□□□ -0.34
SS18-211ENST00000578954 CLEC9AQ6UXN8 241 aa12.9□□□□□ -0.34
SS18-211ENST00000578954 Q6ZRM9 215 aa12.9□□□□□ -0.34
SS18-211ENST00000578954 IL17RELQ6ZVW7 336 aa12.9□□□□□ -0.34
SS18-211ENST00000578954 SSX9Q7RTT3 188 aa12.9□□□□□ -0.34
SS18-211ENST00000578954 FOXRED2Q8IWF2 684 aa12.9□□□□□ -0.34
SS18-211ENST00000578954 VKORC1L1Q8N0U8 176 aa12.9□□□□□ -0.34
SS18-211ENST00000578954 ZBTB8BQ8NAP8 495 aaPredicted RBP12.9□□□□□ -0.34
SS18-211ENST00000578954 RNASE11Q8TAA1 199 aaKnown RBP12.9□□□□□ -0.34
SS18-211ENST00000578954 TMEM167AQ8TBQ9 72 aa12.9□□□□□ -0.34
SS18-211ENST00000578954 ZNF48Q96MX3 618 aaPredicted RBP12.9□□□□□ -0.34
SS18-211ENST00000578954 NMES1Q9C002 83 aa12.9□□□□□ -0.34
SS18-211ENST00000578954 PLSCR3Q9NRY6 295 aa12.9□□□□□ -0.34
SS18-211ENST00000578954 TCF19Q9Y242 345 aa12.9□□□□□ -0.34
SS18-211ENST00000578954 C5orf51A6NDU8 294 aa12.89□□□□□ -0.35
SS18-211ENST00000578954 A6NDX4 124 aa12.89□□□□□ -0.35
SS18-211ENST00000578954 UPK2O00526 184 aa12.89□□□□□ -0.35
SS18-211ENST00000578954 RRHO14718 337 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms