RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 SPAG16Q8N0X2 631 aa13.61□□□□□ -0.23
CLN3-217ENST00000565354 TOMM5Q8N4H5 51 aa13.61□□□□□ -0.23
CLN3-217ENST00000565354 C11orf44Q8N8P7 122 aa13.61□□□□□ -0.23
CLN3-217ENST00000565354 NOL4LQ96MY1 436 aaPredicted RBP13.61□□□□□ -0.23
CLN3-217ENST00000565354 HSPB9Q9BQS6 159 aa13.61□□□□□ -0.23
CLN3-217ENST00000565354 PARP11Q9NR21 331 aa13.61□□□□□ -0.23
CLN3-217ENST00000565354 MCUBQ9NWR8 336 aa13.61□□□□□ -0.23
CLN3-217ENST00000565354 PSMB11A5LHX3 300 aa13.6□□□□□ -0.23
CLN3-217ENST00000565354 VDAC1P21796 283 aa13.6□□□□□ -0.23
CLN3-217ENST00000565354 ECI1P42126 302 aa13.6□□□□□ -0.23
CLN3-217ENST00000565354 STPG2Q8N412 459 aa13.6□□□□□ -0.23
CLN3-217ENST00000565354 OR5AU1Q8NGC0 362 aa13.6□□□□□ -0.23
CLN3-217ENST00000565354 OR4X2Q8NGF9 303 aa13.6□□□□□ -0.23
CLN3-217ENST00000565354 OR4C16Q8NGL9 310 aa13.6□□□□□ -0.23
CLN3-217ENST00000565354 RSRP1Q9BUV0 290 aa13.6□□□□□ -0.23
CLN3-217ENST00000565354 GON7Q9BXV9 100 aa13.6□□□□□ -0.23
CLN3-217ENST00000565354 WNT10AQ9GZT5 417 aa13.6□□□□□ -0.23
CLN3-217ENST00000565354 TENM3Q9P273 2699 aa13.59□□□□□ -0.23
CLN3-217ENST00000565354 LINC01548A6NM66 108 aa13.59□□□□□ -0.23
CLN3-217ENST00000565354 PGLYRP1O75594 196 aaPredicted RBP13.59□□□□□ -0.23
CLN3-217ENST00000565354 CNIH1O95406 144 aa13.59□□□□□ -0.23
CLN3-217ENST00000565354 CA2P00918 260 aa13.59□□□□□ -0.23
CLN3-217ENST00000565354 HRASP01112 189 aa13.59□□□□□ -0.23
CLN3-217ENST00000565354 GNB1P62873 340 aa13.59□□□□□ -0.23
CLN3-217ENST00000565354 TRIQKQ629K1 86 aa13.59□□□□□ -0.23
CLN3-217ENST00000565354 ZNF57Q68EA5 555 aaPredicted RBP13.59□□□□□ -0.23
CLN3-217ENST00000565354 PPP1R27Q86WC6 154 aa13.59□□□□□ -0.23
CLN3-217ENST00000565354 LHFPL1Q86WI0 220 aa13.59□□□□□ -0.23
CLN3-217ENST00000565354 TERB2Q8NHR7 220 aa13.59□□□□□ -0.23
CLN3-217ENST00000565354 ZFAND1Q8TCF1 268 aa13.59□□□□□ -0.23
CLN3-217ENST00000565354 CD300LFQ8TDQ1 290 aa13.59□□□□□ -0.23
CLN3-217ENST00000565354 PRRT1Q99946 306 aa13.59□□□□□ -0.23
CLN3-217ENST00000565354 SRRQ9GZT4 340 aa13.59□□□□□ -0.23
CLN3-217ENST00000565354 OR51J1Q9H342 316 aa13.59□□□□□ -0.23
CLN3-217ENST00000565354 SCP2D1Q9UJQ7 156 aa13.59□□□□□ -0.23
CLN3-217ENST00000565354 RYR3Q15413 4870 aa13.58□□□□□ -0.24
CLN3-217ENST00000565354 IGHV7-81A0A0B4J1V7 117 aa13.58□□□□□ -0.24
CLN3-217ENST00000565354 CREBL2O60519 120 aaPredicted RBP13.58□□□□□ -0.24
CLN3-217ENST00000565354 IGLV2-23P01705 113 aa13.58□□□□□ -0.24
CLN3-217ENST00000565354 UBE2KP61086 200 aa13.58□□□□□ -0.24
CLN3-217ENST00000565354 KHDC1LQ5JSQ8 128 aa13.58□□□□□ -0.24
CLN3-217ENST00000565354 GDPD1Q8N9F7 314 aa13.58□□□□□ -0.24
CLN3-217ENST00000565354 TEX45Q8NA69 505 aa13.58□□□□□ -0.24
CLN3-217ENST00000565354 VSTM2AQ8TAG5 236 aa13.58□□□□□ -0.24
CLN3-217ENST00000565354 MRAPQ8TCY5 172 aa13.58□□□□□ -0.24
CLN3-217ENST00000565354 ZNF486Q96H40 463 aaPredicted RBP13.58□□□□□ -0.24
CLN3-217ENST00000565354 AIFM2Q9BRQ8 373 aa13.58□□□□□ -0.24
CLN3-217ENST00000565354 TPSG1Q9NRR2 321 aa13.58□□□□□ -0.24
CLN3-217ENST00000565354 C14orf166Q9Y224 244 aaKnown RBP13.58□□□□□ -0.24
CLN3-217ENST00000565354 COL7A1Q02388 2944 aa13.58□□□□□ -0.24
CLN3-217ENST00000565354 SRRM4A7MD48 611 aaKnown RBP13.57□□□□□ -0.24
CLN3-217ENST00000565354 FCN1O00602 326 aa13.57□□□□□ -0.24
CLN3-217ENST00000565354 ATP6V0E1O15342 81 aa13.57□□□□□ -0.24
CLN3-217ENST00000565354 RBFOX2O43251 390 aaKnown RBP eCLIP13.57□□□□□ -0.24
CLN3-217ENST00000565354 HPRT1P00492 218 aa13.57□□□□□ -0.24
CLN3-217ENST00000565354 ZNF735P0CB33 412 aa13.57□□□□□ -0.24
CLN3-217ENST00000565354 SAA1P0DJI8 122 aaPredicted RBP13.57□□□□□ -0.24
CLN3-217ENST00000565354 CD28P10747 220 aa13.57□□□□□ -0.24
CLN3-217ENST00000565354 CX3CL1P78423 397 aa13.57□□□□□ -0.24
CLN3-217ENST00000565354 ZNF45Q02386 682 aa13.57□□□□□ -0.24
CLN3-217ENST00000565354 IDO2Q6ZQW0 420 aa13.57□□□□□ -0.24
CLN3-217ENST00000565354 SSX9Q7RTT3 188 aa13.57□□□□□ -0.24
CLN3-217ENST00000565354 ZNF329Q86UD4 541 aa13.57□□□□□ -0.24
CLN3-217ENST00000565354 TBC1D26Q86UD7 250 aa13.57□□□□□ -0.24
CLN3-217ENST00000565354 CCDC71LQ8N9Z2 235 aa13.57□□□□□ -0.24
CLN3-217ENST00000565354 OR51S1Q8NGJ8 323 aa13.57□□□□□ -0.24
CLN3-217ENST00000565354 MARCH1Q8TCQ1 289 aa13.57□□□□□ -0.24
CLN3-217ENST00000565354 TRIM63Q969Q1 353 aa13.57□□□□□ -0.24
CLN3-217ENST00000565354 SLC2A9Q9NRM0 540 aa13.57□□□□□ -0.24
CLN3-217ENST00000565354 COPZ2Q9P299 210 aa13.57□□□□□ -0.24
CLN3-217ENST00000565354 RAMP3O60896 148 aa13.56□□□□□ -0.24
CLN3-217ENST00000565354 ACTL6BO94805 426 aa13.56□□□□□ -0.24
CLN3-217ENST00000565354 PI3P19957 117 aa13.56□□□□□ -0.24
CLN3-217ENST00000565354 F2RP25116 425 aa13.56□□□□□ -0.24
CLN3-217ENST00000565354 ERVK-16P61578 105 aa13.56□□□□□ -0.24
CLN3-217ENST00000565354 FXYD3Q14802 87 aa13.56□□□□□ -0.24
CLN3-217ENST00000565354 ECSCRQ19T08 205 aa13.56□□□□□ -0.24
CLN3-217ENST00000565354 ZNF562Q6V9R5 426 aa13.56□□□□□ -0.24
CLN3-217ENST00000565354 TCTEX1D1Q8N7M0 179 aa13.56□□□□□ -0.24
CLN3-217ENST00000565354 GRPEL2Q8TAA5 225 aa13.56□□□□□ -0.24
CLN3-217ENST00000565354 ARPC1AQ92747 370 aa13.56□□□□□ -0.24
CLN3-217ENST00000565354 PTTG2Q9NZH5 202 aa13.56□□□□□ -0.24
CLN3-217ENST00000565354 WSB1Q9Y6I7 421 aa13.56□□□□□ -0.24
CLN3-217ENST00000565354 TRAV41A0A0B4J266 112 aa13.55□□□□□ -0.24
CLN3-217ENST00000565354 TCRBV4S1A1TA0A5B7 111 aa13.55□□□□□ -0.24
CLN3-217ENST00000565354 OR2A4O95047 310 aa13.55□□□□□ -0.24
CLN3-217ENST00000565354 IGF1P05019 195 aa13.55□□□□□ -0.24
CLN3-217ENST00000565354 CRYGBP07316 175 aa13.55□□□□□ -0.24
CLN3-217ENST00000565354 NQO2P16083 231 aa13.55□□□□□ -0.24
CLN3-217ENST00000565354 PIGPP57054 158 aa13.55□□□□□ -0.24
CLN3-217ENST00000565354 TAS2R31P59538 309 aa13.55□□□□□ -0.24
CLN3-217ENST00000565354 TMEM267Q0VDI3 215 aaPredicted RBP13.55□□□□□ -0.24
CLN3-217ENST00000565354 KLF9Q13886 244 aaPredicted RBP13.55□□□□□ -0.24
CLN3-217ENST00000565354 TNXAQ16473 311 aa13.55□□□□□ -0.24
CLN3-217ENST00000565354 NSUN5P1Q3KNT7 163 aa13.55□□□□□ -0.24
CLN3-217ENST00000565354 C10orf99Q6UWK7 81 aa13.55□□□□□ -0.24
CLN3-217ENST00000565354 VKORC1L1Q8N0U8 176 aa13.55□□□□□ -0.24
CLN3-217ENST00000565354 COMMD1Q8N668 190 aa13.55□□□□□ -0.24
CLN3-217ENST00000565354 DMBX1Q8NFW5 382 aa13.55□□□□□ -0.24
CLN3-217ENST00000565354 OR13C8Q8NGS7 320 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms