RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	IDNK	Q5T6J7	187 aa		10.85	□□□□□ -0.67
TPM1-223	ENST00000560445	ZNF66	Q6ZN08	573 aa		10.85	□□□□□ -0.67
TPM1-223	ENST00000560445	OVCH2	Q7RTZ1	564 aa		10.85	□□□□□ -0.67
TPM1-223	ENST00000560445	LGALS14	Q8TCE9	139 aa		10.85	□□□□□ -0.67
TPM1-223	ENST00000560445	CASTOR1	Q8WTX7	329 aa		10.85	□□□□□ -0.67
TPM1-223	ENST00000560445	SRSF12	Q8WXF0	261 aa	Known RBP	10.85	□□□□□ -0.67
TPM1-223	ENST00000560445	SNAPC3	Q92966	411 aa		10.85	□□□□□ -0.67
TPM1-223	ENST00000560445	RSRP1	Q9BUV0	290 aa		10.85	□□□□□ -0.67
TPM1-223	ENST00000560445	PEMT	Q9UBM1	199 aa		10.85	□□□□□ -0.67
TPM1-223	ENST00000560445	PEF1	Q9UBV8	284 aa	Known RBP	10.85	□□□□□ -0.67
TPM1-223	ENST00000560445	RBMX2	Q9Y388	322 aa	Known RBP	10.85	□□□□□ -0.67
TPM1-223	ENST00000560445	MSGN1	A6NI15	193 aa		10.84	□□□□□ -0.67
TPM1-223	ENST00000560445	AIRE	O43918	545 aa		10.84	□□□□□ -0.67
TPM1-223	ENST00000560445	FCGR3B	O75015	233 aa		10.84	□□□□□ -0.67
TPM1-223	ENST00000560445	HRAS	P01112	189 aa		10.84	□□□□□ -0.67
TPM1-223	ENST00000560445	SPN	P16150	400 aa		10.84	□□□□□ -0.67
TPM1-223	ENST00000560445	MAS1L	P35410	378 aa		10.84	□□□□□ -0.67
TPM1-223	ENST00000560445	LINC00205	P59089	165 aa		10.84	□□□□□ -0.67
TPM1-223	ENST00000560445	RPEL1	Q2QD12	228 aa		10.84	□□□□□ -0.67
TPM1-223	ENST00000560445	SGPP2	Q8IWX5	399 aa		10.84	□□□□□ -0.67
TPM1-223	ENST00000560445	ZBTB34	Q8NCN2	500 aa		10.84	□□□□□ -0.67
TPM1-223	ENST00000560445	NUDCD2	Q8WVJ2	157 aa		10.84	□□□□□ -0.67
TPM1-223	ENST00000560445	TCTEX1D2	Q8WW35	142 aa		10.84	□□□□□ -0.67
TPM1-223	ENST00000560445	ZMAT4	Q9H898	229 aa		10.84	□□□□□ -0.67
TPM1-223	ENST00000560445		A0A087WXM4	84 aa		10.83	□□□□□ -0.68
TPM1-223	ENST00000560445	DPPA5	A6NC42	116 aa		10.83	□□□□□ -0.68
TPM1-223	ENST00000560445	OR2A4	O95047	310 aa		10.83	□□□□□ -0.68
TPM1-223	ENST00000560445	TNFAIP8	O95379	198 aa		10.83	□□□□□ -0.68
TPM1-223	ENST00000560445	PJVK	Q0ZLH3	352 aa		10.83	□□□□□ -0.68
TPM1-223	ENST00000560445	CATR1	Q13166	79 aa		10.83	□□□□□ -0.68
TPM1-223	ENST00000560445	LCN12	Q6JVE5	192 aa		10.83	□□□□□ -0.68
TPM1-223	ENST00000560445	ZNF343	Q6P1L6	599 aa		10.83	□□□□□ -0.68
TPM1-223	ENST00000560445	GTSCR1	Q86UQ5	136 aa		10.83	□□□□□ -0.68
TPM1-223	ENST00000560445	NECAP1	Q8NC96	275 aa		10.83	□□□□□ -0.68
TPM1-223	ENST00000560445	BEST4	Q8NFU0	473 aa		10.83	□□□□□ -0.68
TPM1-223	ENST00000560445	OR9G4	Q8NGQ1	327 aa		10.83	□□□□□ -0.68
TPM1-223	ENST00000560445	SIGLEC8	Q9NYZ4	499 aa		10.83	□□□□□ -0.68
TPM1-223	ENST00000560445	TRAV18	A0A075B6X5	111 aa		10.82	□□□□□ -0.68
TPM1-223	ENST00000560445	ANKRD34B	A5PLL1	514 aa		10.82	□□□□□ -0.68
TPM1-223	ENST00000560445	LINC00473	A8K010	186 aa		10.82	□□□□□ -0.68
TPM1-223	ENST00000560445	IGLV1-51	P01701	117 aa		10.82	□□□□□ -0.68
TPM1-223	ENST00000560445	SAA1	P0DJI8	122 aa	Predicted RBP	10.82	□□□□□ -0.68
TPM1-223	ENST00000560445	NFYA	P23511	347 aa	Predicted RBP	10.82	□□□□□ -0.68
TPM1-223	ENST00000560445	ATP5G2	Q06055	141 aa		10.82	□□□□□ -0.68
TPM1-223	ENST00000560445	ADAD2	Q8NCV1	583 aa	Known RBP	10.82	□□□□□ -0.68
TPM1-223	ENST00000560445	TSPAN14	Q8NG11	270 aa		10.82	□□□□□ -0.68
TPM1-223	ENST00000560445	OR4A5	Q8NH83	315 aa		10.82	□□□□□ -0.68
TPM1-223	ENST00000560445	CD300LF	Q8TDQ1	290 aa		10.82	□□□□□ -0.68
TPM1-223	ENST00000560445	OR2A7	Q96R45	310 aa		10.82	□□□□□ -0.68
TPM1-223	ENST00000560445	ZNF430	Q9H8G1	570 aa	Predicted RBP	10.82	□□□□□ -0.68
TPM1-223	ENST00000560445	ZNF257	Q9Y2Q1	563 aa		10.82	□□□□□ -0.68
TPM1-223	ENST00000560445	SRRM4	A7MD48	611 aa	Known RBP	10.81	□□□□□ -0.68
TPM1-223	ENST00000560445	C3orf84	H3BNL1	204 aa		10.81	□□□□□ -0.68
TPM1-223	ENST00000560445	CYB5B	O43169	146 aa		10.81	□□□□□ -0.68
TPM1-223	ENST00000560445	RBFOX2	O43251	390 aa	Known RBP eCLIP	10.81	□□□□□ -0.68
TPM1-223	ENST00000560445	HIST1H1B	P16401	226 aa	Known RBP	10.81	□□□□□ -0.68
TPM1-223	ENST00000560445	SSBP2	P81877	361 aa	Predicted RBP	10.81	□□□□□ -0.68
TPM1-223	ENST00000560445	RHOG	P84095	191 aa		10.81	□□□□□ -0.68
TPM1-223	ENST00000560445	KLF5	Q13887	457 aa	Predicted RBP	10.81	□□□□□ -0.68
TPM1-223	ENST00000560445	HOGA1	Q86XE5	327 aa		10.81	□□□□□ -0.68
TPM1-223	ENST00000560445		Q8N402	240 aa		10.81	□□□□□ -0.68
TPM1-223	ENST00000560445	TTC9C	Q8N5M4	171 aa		10.81	□□□□□ -0.68
TPM1-223	ENST00000560445	OR2K2	Q8NGT1	345 aa		10.81	□□□□□ -0.68
TPM1-223	ENST00000560445	S100A16	Q96FQ6	103 aa	Known RBP	10.81	□□□□□ -0.68
TPM1-223	ENST00000560445	C5orf30	Q96GV9	206 aa		10.81	□□□□□ -0.68
TPM1-223	ENST00000560445	IFT46	Q9NQC8	304 aa		10.81	□□□□□ -0.68
TPM1-223	ENST00000560445	ELF5	Q9UKW6	265 aa	Predicted RBP	10.81	□□□□□ -0.68
TPM1-223	ENST00000560445	SPATA2	Q9UM82	520 aa		10.81	□□□□□ -0.68
TPM1-223	ENST00000560445	IGKV1D-8	A0A087WSZ0	117 aa		10.8	□□□□□ -0.68
TPM1-223	ENST00000560445		J3QRK9	145 aa		10.8	□□□□□ -0.68
TPM1-223	ENST00000560445	KBTBD11	O94819	623 aa		10.8	□□□□□ -0.68
TPM1-223	ENST00000560445	CLEC2L	P0C7M8	214 aa		10.8	□□□□□ -0.68
TPM1-223	ENST00000560445	DYRK1A	Q13627	763 aa		10.8	□□□□□ -0.68
TPM1-223	ENST00000560445	EXOSC2	Q13868	293 aa	Known RBP	10.8	□□□□□ -0.68
TPM1-223	ENST00000560445	IDO2	Q6ZQW0	420 aa		10.8	□□□□□ -0.68
TPM1-223	ENST00000560445	OR13F1	Q8NGS4	319 aa		10.8	□□□□□ -0.68
TPM1-223	ENST00000560445	KCTD12	Q96CX2	325 aa	Known RBP	10.8	□□□□□ -0.68
TPM1-223	ENST00000560445	RNF167	Q9H6Y7	350 aa		10.8	□□□□□ -0.68
TPM1-223	ENST00000560445	TNC	P24821	2201 aa		10.8	□□□□□ -0.68
TPM1-223	ENST00000560445	STAB2	Q8WWQ8	2551 aa		10.79	□□□□□ -0.68
TPM1-223	ENST00000560445	NPIPB5	A8MRT5	1133 aa		10.79	□□□□□ -0.68
TPM1-223	ENST00000560445	SSX5	O60225	188 aa		10.79	□□□□□ -0.68
TPM1-223	ENST00000560445	FGF2	P09038	288 aa		10.79	□□□□□ -0.68
TPM1-223	ENST00000560445	FRMD6-AS1	P0C7T7	363 aa		10.79	□□□□□ -0.68
TPM1-223	ENST00000560445	FCGR2C	P31995	323 aa		10.79	□□□□□ -0.68
TPM1-223	ENST00000560445	RPL27A	P46776	148 aa	Known RBP	10.79	□□□□□ -0.68
TPM1-223	ENST00000560445	SYNJ2BP	P57105	145 aa		10.79	□□□□□ -0.68
TPM1-223	ENST00000560445	HERV-K104	P61576	105 aa		10.79	□□□□□ -0.68
TPM1-223	ENST00000560445	OR2B11	Q5JQS5	317 aa		10.79	□□□□□ -0.68
TPM1-223	ENST00000560445	LAX1	Q8IWV1	398 aa		10.79	□□□□□ -0.68
TPM1-223	ENST00000560445	MFSD4A	Q8N468	514 aa		10.79	□□□□□ -0.68
TPM1-223	ENST00000560445	TMEM167A	Q8TBQ9	72 aa		10.79	□□□□□ -0.68
TPM1-223	ENST00000560445	SECTM1	Q8WVN6	248 aa		10.79	□□□□□ -0.68
TPM1-223	ENST00000560445	AUNIP	Q9H7T9	357 aa		10.79	□□□□□ -0.68
TPM1-223	ENST00000560445	TAS2R8	Q9NYW2	309 aa		10.79	□□□□□ -0.68
TPM1-223	ENST00000560445	TRBV9	A0A0B4J1U6	114 aa		10.78	□□□□□ -0.68
TPM1-223	ENST00000560445	IGKV1D-13	A0A0B4J2D9	117 aa		10.78	□□□□□ -0.68
TPM1-223	ENST00000560445		A8MZ25	164 aa		10.78	□□□□□ -0.68
TPM1-223	ENST00000560445	PPY	P01298	95 aa		10.78	□□□□□ -0.68
TPM1-223	ENST00000560445	IGKV1-13	P0DP09	117 aa		10.78	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms