RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 VKORC1L1Q8N0U8 176 aa9.02□□□□□ -0.97
CCDC88C-212ENST00000556767 OR4C16Q8NGL9 310 aa9.02□□□□□ -0.97
CCDC88C-212ENST00000556767 TERB2Q8NHR7 220 aa9.02□□□□□ -0.97
CCDC88C-212ENST00000556767 GRPEL2Q8TAA5 225 aa9.02□□□□□ -0.97
CCDC88C-212ENST00000556767 FAM103A1Q9BTL3 118 aaKnown RBP9.02□□□□□ -0.97
CCDC88C-212ENST00000556767 RSRP1Q9BUV0 290 aa9.02□□□□□ -0.97
CCDC88C-212ENST00000556767 TET2Q6N021 2002 aaPredicted RBP9.02□□□□□ -0.97
CCDC88C-212ENST00000556767 TRAV41A0A0B4J266 112 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 G3V318 75 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 ACTL6BO94805 426 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 HPRT1P00492 218 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 OPN1MWP04001 364 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 IGF1P05019 195 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 CRYGBP07316 175 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 ZNF735P0CB33 412 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 OPN1MW2P0DN77 364 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 OPN1MW3P0DN78 364 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 PI3P19957 117 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 ETV6P41212 452 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 BRWD1-AS2P59051 145 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 AP3S2P59780 193 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 NDPQ00604 133 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 PJVKQ0ZLH3 352 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 TNXAQ16473 311 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 C2orf68Q2NKX9 166 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 CNPY1Q3B7I2 92 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 ZNF57Q68EA5 555 aaPredicted RBP9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 TEX38Q6PEX7 206 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 ZNF562Q6V9R5 426 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 TBC1D26Q86UD7 250 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 LHFPL1Q86WI0 220 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 TOMM5Q8N4H5 51 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 TEX45Q8NA69 505 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 MARCH1Q8TCQ1 289 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 CD300LFQ8TDQ1 290 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 WIPF2Q8TF74 440 aaPredicted RBP9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 ARPC1AQ92747 370 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 PRRT1Q99946 306 aa9.01□□□□□ -0.97
CCDC88C-212ENST00000556767 RBFOX2O43251 390 aaKnown RBP eCLIP9□□□□□ -0.97
CCDC88C-212ENST00000556767 CREBL2O60519 120 aaPredicted RBP9□□□□□ -0.97
CCDC88C-212ENST00000556767 OR2A4O95047 310 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 S1PR2O95136 353 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 RPA2P15927 270 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 F2RP25116 425 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 FAUP35544 74 aaKnown RBP9□□□□□ -0.97
CCDC88C-212ENST00000556767 LPAR6P43657 344 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 CD83Q01151 205 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 TMEM267Q0VDI3 215 aaPredicted RBP9□□□□□ -0.97
CCDC88C-212ENST00000556767 PRSS8Q16651 343 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 TCTEX1D4Q5JR98 221 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 CXorf66Q5JRM2 361 aaPredicted RBP9□□□□□ -0.97
CCDC88C-212ENST00000556767 TRIQKQ629K1 86 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 UNQ5815/PRO19632Q6UWF5 114 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 NDUFA11Q86Y39 141 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 COMMD1Q8N668 190 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 DMBX1Q8NFW5 382 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 OR51S1Q8NGJ8 323 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 OR13C8Q8NGS7 320 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 VSTM2AQ8TAG5 236 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 ZFAND1Q8TCF1 268 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 RHOVQ96L33 236 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 OR2A7Q96R45 310 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 PHB2Q99623 299 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 AIFM2Q9BRQ8 373 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 SRRQ9GZT4 340 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 HRASLSQ9HDD0 168 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 BATF3Q9NR55 127 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 SLC2A9Q9NRM0 540 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 COPZ2Q9P299 210 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 SCP2D1Q9UJQ7 156 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 C14orf166Q9Y224 244 aaKnown RBP9□□□□□ -0.97
CCDC88C-212ENST00000556767 FBXO7Q9Y3I1 522 aa9□□□□□ -0.97
CCDC88C-212ENST00000556767 A0A1W2PN81 502 aa8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 NUDT19A8MXV4 375 aa8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 ARPC1BO15143 372 aaKnown RBP8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 MPPED1O15442 326 aa8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 PF4V1P10720 104 aa8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 NQO2P16083 231 aa8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 CHRNA7P36544 502 aa8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 ECI1P42126 302 aa8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 PIGPP57054 158 aa8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 TAS2R31P59538 309 aa8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 ERVK-16P61578 105 aa8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 TMEM65Q6PI78 240 aa8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 LCNL1Q6ZST4 164 aa8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 MMD2Q8IY49 270 aa8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 GDPD1Q8N9F7 314 aa8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 CCDC71LQ8N9Z2 235 aa8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 LFNGQ8NES3 379 aa8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 FAM110DQ8TAY7 271 aaPredicted RBP8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 TRIM63Q969Q1 353 aa8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 R3HDM4Q96D70 268 aa8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 ZNF486Q96H40 463 aaPredicted RBP8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 ZNF430Q9H8G1 570 aaPredicted RBP8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 PLEKHA2Q9HB19 425 aa8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 ZNF580Q9UK33 172 aa8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 TSSC4Q9Y5U2 329 aaPredicted RBP8.99□□□□□ -0.97
CCDC88C-212ENST00000556767 PLXNB1O43157 2135 aa8.98□□□□□ -0.97
CCDC88C-212ENST00000556767 LINC00854A0A1B0GVQ3 168 aa8.98□□□□□ -0.97
CCDC88C-212ENST00000556767 KBTBD11O94819 623 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms