RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 C10orf91Q5T1B1 145 aa10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 INO80CQ6PI98 192 aaPredicted RBP10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 ABHD5Q8WTS1 349 aa10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 NTF3P20783 257 aa10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 AGAP20933 346 aa10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 TNFAIP6P98066 277 aaPredicted RBP10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 Q6P435 159 aa10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 SGMS2Q8NHU3 365 aa10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 DERL1Q9BUN8 251 aa10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 DECR2Q9NUI1 292 aa10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 ZNRD1Q9P1U0 126 aa10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 LINC00473A8K010 186 aa10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 MLNRO43193 412 aa10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 MBP02144 154 aa10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 SOD3P08294 240 aa10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 FTH1P19P0C7X4 201 aa10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 B2MP61769 119 aa10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 PLGLAQ15195 96 aa10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 NHLRC2Q8NBF2 726 aa10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 MALRD1Q5VYJ5 2156 aa10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 TRGV10A0A0A0MS01 117 aa10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 TRAV3A0A0B4J244 114 aa10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 CDX1P47902 265 aaPredicted RBP10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 GABRA6Q16445 453 aa10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 ACP7Q6ZNF0 438 aa10.18□□□□□ -0.78
CCDC88C-211ENST00000556726 ATG2AQ2TAZ0 1938 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 A0A087X0M5 115 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 A0A1B0GX30 115 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 A8MXE2 369 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 FAM27E3Q08E93 113 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 PNRC1Q12796 327 aaPredicted RBP10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 PYY3Q5JQD4 70 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 Q6ZT83 130 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 LHFPL4Q7Z7J7 247 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 PXMP4Q9Y6I8 212 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 ASPMQ8IZT6 3477 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 TMEM265A0A087WTH1 108 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 MT-CO2P00403 227 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 ARL14EPLP0DKL9 152 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 CD33P20138 364 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 PSG5Q15238 335 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 STUMQ69YW2 141 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 WDR82Q6UXN9 313 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 LINC00596Q86U02 117 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 OR10X1Q8NGY0 326 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 LSM10Q969L4 123 aaKnown RBP10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 NPCDR1Q9BY65 106 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 OR51M1Q9H341 326 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 TUBG2Q9NRH3 451 aa10.17□□□□□ -0.78
CCDC88C-211ENST00000556726 A0A1W2PRD5 423 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 A0A1W2PRF3 423 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 A0A1W2PRM7 423 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 UBE2CO00762 179 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 CDX4O14627 284 aaPredicted RBP10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 IGKV1D-33P01593 117 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 IGKV1-33P01594 117 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 ZNF726P1Q15940 193 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 HAPLN4Q86UW8 402 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 RPRMLQ8N4K4 120 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 COMMD5Q9GZQ3 224 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 RYDENQ9NUL5 291 aaKnown RBP10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 RNF115Q9Y4L5 304 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 OR9G9P0C7N8 305 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 C1QTNF9P0C862 333 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 KIAA1644Q3SXP7 199 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 TCF23Q7RTU1 214 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 IMMP2LQ96T52 175 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 SIRT7Q9NRC8 400 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 TMEM140Q9NV12 185 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 CISD1Q9NZ45 108 aaKnown RBP10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 LOC400499M0QZD8 3231 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 H0Y8G0 127 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 SLC17A3O00476 420 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 GALR2O43603 387 aaPredicted RBP10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 G0S2P27469 103 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 P2RY6Q15077 328 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 FAM216BQ8N7L0 139 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 COQ2Q96H96 371 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 SDF2L1Q9HCN8 221 aa10.16□□□□□ -0.78
CCDC88C-211ENST00000556726 H3BTX0 84 aa10.15□□□□□ -0.78
CCDC88C-211ENST00000556726 RRHO14718 337 aa10.15□□□□□ -0.78
CCDC88C-211ENST00000556726 MZT1Q08AG7 82 aa10.15□□□□□ -0.78
CCDC88C-211ENST00000556726 FXYD3Q14802 87 aa10.15□□□□□ -0.78
CCDC88C-211ENST00000556726 NPY1RP25929 384 aa10.15□□□□□ -0.78
CCDC88C-211ENST00000556726 RBMXL3Q8N7X1 1067 aaKnown RBP10.15□□□□□ -0.78
CCDC88C-211ENST00000556726 IER2Q9BTL4 223 aa10.15□□□□□ -0.78
CCDC88C-211ENST00000556726 TUBA4BQ9H853 241 aa10.15□□□□□ -0.78
CCDC88C-211ENST00000556726 A0A1B0GUS0 222 aa10.15□□□□□ -0.79
CCDC88C-211ENST00000556726 GZMHP20718 246 aa10.15□□□□□ -0.79
CCDC88C-211ENST00000556726 HOXA5P20719 270 aa10.15□□□□□ -0.79
CCDC88C-211ENST00000556726 COL8A2P25067 703 aa10.15□□□□□ -0.79
CCDC88C-211ENST00000556726 RPL23P62829 140 aaKnown RBP10.15□□□□□ -0.79
CCDC88C-211ENST00000556726 MRPL54Q6P161 138 aaKnown RBP10.15□□□□□ -0.79
CCDC88C-211ENST00000556726 CISD2Q8N5K1 135 aaKnown RBP10.15□□□□□ -0.79
CCDC88C-211ENST00000556726 BLNKQ8WV28 456 aa10.15□□□□□ -0.79
CCDC88C-211ENST00000556726 SNRNP40Q96DI7 357 aaKnown RBP10.15□□□□□ -0.79
CCDC88C-211ENST00000556726 SLC35D1Q9NTN3 355 aa10.15□□□□□ -0.79
CCDC88C-211ENST00000556726 CPAMD8Q8IZJ3 1885 aa10.15□□□□□ -0.79
CCDC88C-211ENST00000556726 NDUFS6O75380 124 aaKnown RBP10.14□□□□□ -0.79
CCDC88C-211ENST00000556726 PMCHP20382 165 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms