RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 TRAV18A0A075B6X5 111 aa12.52□□□□□ -0.41
VPS29-207ENST00000549970 SLC22A5O76082 557 aa12.52□□□□□ -0.41
VPS29-207ENST00000549970 ACTL6BO94805 426 aa12.52□□□□□ -0.41
VPS29-207ENST00000549970 IGLV2-14P01704 120 aa12.52□□□□□ -0.41
VPS29-207ENST00000549970 AADACP22760 399 aa12.52□□□□□ -0.41
VPS29-207ENST00000549970 DYRK1AQ13627 763 aa12.52□□□□□ -0.41
VPS29-207ENST00000549970 CDK10Q15131 360 aa12.52□□□□□ -0.41
VPS29-207ENST00000549970 ADAD2Q8NCV1 583 aaKnown RBP12.52□□□□□ -0.41
VPS29-207ENST00000549970 SPATA2Q9UM82 520 aa12.52□□□□□ -0.41
VPS29-207ENST00000549970 TRIM64CA6NLI5 447 aa12.51□□□□□ -0.41
VPS29-207ENST00000549970 CREBL2O60519 120 aaPredicted RBP12.51□□□□□ -0.41
VPS29-207ENST00000549970 RBMXL2O75526 392 aaKnown RBP12.51□□□□□ -0.41
VPS29-207ENST00000549970 BRI3O95415 125 aa12.51□□□□□ -0.41
VPS29-207ENST00000549970 TRBV12-3P01733 135 aa12.51□□□□□ -0.41
VPS29-207ENST00000549970 OR9G9P0C7N8 305 aa12.51□□□□□ -0.41
VPS29-207ENST00000549970 SCAND1P57086 179 aa12.51□□□□□ -0.41
VPS29-207ENST00000549970 ARPC4P59998 168 aa12.51□□□□□ -0.41
VPS29-207ENST00000549970 C10orf55Q5SWW7 151 aa12.51□□□□□ -0.41
VPS29-207ENST00000549970 OVCH2Q7RTZ1 564 aa12.51□□□□□ -0.41
VPS29-207ENST00000549970 ANKRD13BQ86YJ7 626 aa12.51□□□□□ -0.41
VPS29-207ENST00000549970 VKORC1L1Q8N0U8 176 aa12.51□□□□□ -0.41
VPS29-207ENST00000549970 GVQW1Q8N7I0 195 aa12.51□□□□□ -0.41
VPS29-207ENST00000549970 TCTEX1D2Q8WW35 142 aa12.51□□□□□ -0.41
VPS29-207ENST00000549970 USMG5Q96IX5 58 aa12.51□□□□□ -0.41
VPS29-207ENST00000549970 TAS2R8Q9NYW2 309 aa12.51□□□□□ -0.41
VPS29-207ENST00000549970 PEF1Q9UBV8 284 aaKnown RBP12.51□□□□□ -0.41
VPS29-207ENST00000549970 ADAM30Q9UKF2 790 aa12.51□□□□□ -0.41
VPS29-207ENST00000549970 TENM3Q9P273 2699 aa12.51□□□□□ -0.41
VPS29-207ENST00000549970 DNAH7Q8WXX0 4024 aa12.5□□□□□ -0.41
VPS29-207ENST00000549970 PRH1P02810 166 aa12.5□□□□□ -0.41
VPS29-207ENST00000549970 FCER2P06734 321 aa12.5□□□□□ -0.41
VPS29-207ENST00000549970 PTHLHP12272 177 aa12.5□□□□□ -0.41
VPS29-207ENST00000549970 SYNJ2BPP57105 145 aa12.5□□□□□ -0.41
VPS29-207ENST00000549970 KLF5Q13887 457 aaPredicted RBP12.5□□□□□ -0.41
VPS29-207ENST00000549970 KCTD21Q4G0X4 260 aa12.5□□□□□ -0.41
VPS29-207ENST00000549970 ZNF343Q6P1L6 599 aa12.5□□□□□ -0.41
VPS29-207ENST00000549970 MMD2Q8IY49 270 aa12.5□□□□□ -0.41
VPS29-207ENST00000549970 BEST4Q8NFU0 473 aa12.5□□□□□ -0.41
VPS29-207ENST00000549970 OR4S2Q8NH73 311 aa12.5□□□□□ -0.41
VPS29-207ENST00000549970 GPHA2Q96T91 129 aa12.5□□□□□ -0.41
VPS29-207ENST00000549970 HSD17B10Q99714 261 aaKnown RBP12.5□□□□□ -0.41
VPS29-207ENST00000549970 IGLV1-51P01701 117 aa12.49□□□□□ -0.41
VPS29-207ENST00000549970 FRMD6-AS1P0C7T7 363 aa12.49□□□□□ -0.41
VPS29-207ENST00000549970 FCGR2CP31995 323 aa12.49□□□□□ -0.41
VPS29-207ENST00000549970 TGFBR1P36897 503 aa12.49□□□□□ -0.41
VPS29-207ENST00000549970 RHOGP84095 191 aa12.49□□□□□ -0.41
VPS29-207ENST00000549970 EIF4EBP1Q13541 118 aaPredicted RBP12.49□□□□□ -0.41
VPS29-207ENST00000549970 SBSPONQ8IVN8 264 aa12.49□□□□□ -0.41
VPS29-207ENST00000549970 MFSD4AQ8N468 514 aa12.49□□□□□ -0.41
VPS29-207ENST00000549970 OR9G4Q8NGQ1 327 aa12.49□□□□□ -0.41
VPS29-207ENST00000549970 OR13F1Q8NGS4 319 aa12.49□□□□□ -0.41
VPS29-207ENST00000549970 SECTM1Q8WVN6 248 aa12.49□□□□□ -0.41
VPS29-207ENST00000549970 SPIN2AQ99865 258 aa12.49□□□□□ -0.41
VPS29-207ENST00000549970 SPIN2BQ9BPZ2 258 aa12.49□□□□□ -0.41
VPS29-207ENST00000549970 AKIP1Q9NQ31 210 aa12.49□□□□□ -0.41
VPS29-207ENST00000549970 RYR3Q15413 4870 aa12.48□□□□□ -0.41
VPS29-207ENST00000549970 A0A0A6YYH2 397 aa12.48□□□□□ -0.41
VPS29-207ENST00000549970 A6NJ64 397 aa12.48□□□□□ -0.41
VPS29-207ENST00000549970 TNFSF12O43508 249 aa12.48□□□□□ -0.41
VPS29-207ENST00000549970 OR2A4O95047 310 aa12.48□□□□□ -0.41
VPS29-207ENST00000549970 ZNF45Q02386 682 aa12.48□□□□□ -0.41
VPS29-207ENST00000549970 RPEL1Q2QD12 228 aa12.48□□□□□ -0.41
VPS29-207ENST00000549970 HOGA1Q86XE5 327 aa12.48□□□□□ -0.41
VPS29-207ENST00000549970 OR2A7Q96R45 310 aa12.48□□□□□ -0.41
VPS29-207ENST00000549970 AUNIPQ9H7T9 357 aa12.48□□□□□ -0.41
VPS29-207ENST00000549970 DIABLOQ9NR28 239 aa12.48□□□□□ -0.41
VPS29-207ENST00000549970 CCL28Q9NRJ3 127 aa12.48□□□□□ -0.41
VPS29-207ENST00000549970 MEIS3P1A6NDR6 274 aa12.47□□□□□ -0.41
VPS29-207ENST00000549970 HMX3A6NHT5 357 aa12.47□□□□□ -0.41
VPS29-207ENST00000549970 FAM223BA6NKX1 122 aa12.47□□□□□ -0.41
VPS29-207ENST00000549970 KBTBD11O94819 623 aa12.47□□□□□ -0.41
VPS29-207ENST00000549970 BRWD1-AS2P59051 145 aa12.47□□□□□ -0.41
VPS29-207ENST00000549970 ATP5G2Q06055 141 aa12.47□□□□□ -0.41
VPS29-207ENST00000549970 EXOSC2Q13868 293 aaKnown RBP12.47□□□□□ -0.41
VPS29-207ENST00000549970 ZNF66Q6ZN08 573 aa12.47□□□□□ -0.41
VPS29-207ENST00000549970 SSX9Q7RTT3 188 aa12.47□□□□□ -0.41
VPS29-207ENST00000549970 FAM223AQ8IWN6 122 aa12.47□□□□□ -0.41
VPS29-207ENST00000549970 TTC9CQ8N5M4 171 aa12.47□□□□□ -0.41
VPS29-207ENST00000549970 VSTM2AQ8TAG5 236 aa12.47□□□□□ -0.41
VPS29-207ENST00000549970 SNAPC3Q92966 411 aa12.47□□□□□ -0.41
VPS29-207ENST00000549970 NBEAL2Q6ZNJ1 2754 aa12.47□□□□□ -0.41
VPS29-207ENST00000549970 OR2J3O76001 311 aa12.46□□□□□ -0.41
VPS29-207ENST00000549970 PPYP01298 95 aa12.46□□□□□ -0.41
VPS29-207ENST00000549970 RPL27AP46776 148 aaKnown RBP12.46□□□□□ -0.41
VPS29-207ENST00000549970 FXYD4P59646 89 aa12.46□□□□□ -0.41
VPS29-207ENST00000549970 TATDN3Q17R31 274 aa12.46□□□□□ -0.41
VPS29-207ENST00000549970 TIMM50Q3ZCQ8 353 aa12.46□□□□□ -0.41
VPS29-207ENST00000549970 IL34Q6ZMJ4 242 aa12.46□□□□□ -0.41
VPS29-207ENST00000549970 C19orf35Q6ZS72 473 aa12.46□□□□□ -0.41
VPS29-207ENST00000549970 PUSL1Q8N0Z8 303 aaKnown RBP12.46□□□□□ -0.41
VPS29-207ENST00000549970 TMEM167AQ8TBQ9 72 aa12.46□□□□□ -0.41
VPS29-207ENST00000549970 RCHY1Q96PM5 261 aa12.46□□□□□ -0.41
VPS29-207ENST00000549970 FYTTD1Q96QD9 318 aaKnown RBP12.46□□□□□ -0.41
VPS29-207ENST00000549970 STAB2Q8WWQ8 2551 aa12.45□□□□□ -0.42
VPS29-207ENST00000549970 TRBV9A0A0B4J1U6 114 aa12.45□□□□□ -0.42
VPS29-207ENST00000549970 DPPA5A6NC42 116 aa12.45□□□□□ -0.42
VPS29-207ENST00000549970 TEX22C9J3V5 150 aa12.45□□□□□ -0.42
VPS29-207ENST00000549970 E7EUB6 86 aa12.45□□□□□ -0.42
VPS29-207ENST00000549970 AIREO43918 545 aa12.45□□□□□ -0.42
VPS29-207ENST00000549970 HRASP01112 189 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms