RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 C2orf76Q3KRA6 126 aa6.48□□□□□ -1.37
USP28-215ENST00000545608 PDPNQ86YL7 162 aa6.48□□□□□ -1.37
USP28-215ENST00000545608 POC5Q8NA72 575 aa6.48□□□□□ -1.37
USP28-215ENST00000545608 FAM3DQ96BQ1 224 aa6.48□□□□□ -1.37
USP28-215ENST00000545608 SLA2Q9H6Q3 261 aa6.48□□□□□ -1.37
USP28-215ENST00000545608 C12orf4Q9NQ89 552 aa6.48□□□□□ -1.37
USP28-215ENST00000545608 ZNF355PQ9NSJ1 428 aa6.48□□□□□ -1.37
USP28-215ENST00000545608 SLC35D1Q9NTN3 355 aa6.48□□□□□ -1.37
USP28-215ENST00000545608 SCN3BQ9NY72 215 aa6.48□□□□□ -1.37
USP28-215ENST00000545608 KCNK7Q9Y2U2 307 aa6.48□□□□□ -1.37
USP28-215ENST00000545608 HUWE1Q7Z6Z7 4374 aaKnown RBP6.48□□□□□ -1.37
USP28-215ENST00000545608 TMEM272A0A1B0GTI8 110 aa6.47□□□□□ -1.37
USP28-215ENST00000545608 SRRM4A7MD48 611 aaKnown RBP6.47□□□□□ -1.37
USP28-215ENST00000545608 J3QRK9 145 aa6.47□□□□□ -1.37
USP28-215ENST00000545608 CNIH1O95406 144 aa6.47□□□□□ -1.37
USP28-215ENST00000545608 IGLV1-51P01701 117 aa6.47□□□□□ -1.37
USP28-215ENST00000545608 APOA2P02652 100 aa6.47□□□□□ -1.37
USP28-215ENST00000545608 IGHV4-30-4P0DP06 118 aa6.47□□□□□ -1.37
USP28-215ENST00000545608 PPP5CP53041 499 aa6.47□□□□□ -1.37
USP28-215ENST00000545608 FABP5Q01469 135 aa6.47□□□□□ -1.37
USP28-215ENST00000545608 KLF5Q13887 457 aaPredicted RBP6.47□□□□□ -1.37
USP28-215ENST00000545608 MRGPRG-AS1Q2M3A8 158 aa6.47□□□□□ -1.37
USP28-215ENST00000545608 MOGAT2Q3SYC2 334 aa6.47□□□□□ -1.37
USP28-215ENST00000545608 IGSF11Q5DX21 431 aa6.47□□□□□ -1.37
USP28-215ENST00000545608 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.47□□□□□ -1.37
USP28-215ENST00000545608 OR4A4PQ8NGN8 299 aa6.47□□□□□ -1.37
USP28-215ENST00000545608 C5orf30Q96GV9 206 aa6.47□□□□□ -1.37
USP28-215ENST00000545608 ZNF486Q96H40 463 aaPredicted RBP6.47□□□□□ -1.37
USP28-215ENST00000545608 TM2D3Q9BRN9 247 aa6.47□□□□□ -1.37
USP28-215ENST00000545608 ELOVL1Q9BW60 279 aa6.47□□□□□ -1.37
USP28-215ENST00000545608 DUSP21Q9H596 190 aa6.47□□□□□ -1.37
USP28-215ENST00000545608 RANGRFQ9HD47 186 aaPredicted RBP6.47□□□□□ -1.37
USP28-215ENST00000545608 AKIP1Q9NQ31 210 aa6.47□□□□□ -1.37
USP28-215ENST00000545608 SDHAF2Q9NX18 166 aa6.47□□□□□ -1.37
USP28-215ENST00000545608 GAR1Q9NY12 217 aaKnown RBP6.47□□□□□ -1.37
USP28-215ENST00000545608 STUB1Q9UNE7 303 aa6.47□□□□□ -1.37
USP28-215ENST00000545608 TPRKBQ9Y3C4 175 aa6.47□□□□□ -1.37
USP28-215ENST00000545608 V9GY05 133 aa6.47□□□□□ -1.37
USP28-215ENST00000545608 C13orf42A0A1B0GVH6 325 aa6.46□□□□□ -1.38
USP28-215ENST00000545608 H3BUA1 57 aa6.46□□□□□ -1.38
USP28-215ENST00000545608 BET1O15155 118 aa6.46□□□□□ -1.38
USP28-215ENST00000545608 FABP7O15540 132 aa6.46□□□□□ -1.38
USP28-215ENST00000545608 RBMXL2O75526 392 aaKnown RBP6.46□□□□□ -1.38
USP28-215ENST00000545608 ARL6IP5O75915 188 aa6.46□□□□□ -1.38
USP28-215ENST00000545608 LYL1P12980 280 aa6.46□□□□□ -1.38
USP28-215ENST00000545608 S100A5P33763 92 aa6.46□□□□□ -1.38
USP28-215ENST00000545608 MAP2K4P45985 399 aa6.46□□□□□ -1.38
USP28-215ENST00000545608 LGALS7P47929 136 aa6.46□□□□□ -1.38
USP28-215ENST00000545608 DEFA5Q01523 94 aa6.46□□□□□ -1.38
USP28-215ENST00000545608 ZNF45Q02386 682 aa6.46□□□□□ -1.38
USP28-215ENST00000545608 MLLT11Q13015 90 aaPredicted RBP6.46□□□□□ -1.38
USP28-215ENST00000545608 TRAM1Q15629 374 aa6.46□□□□□ -1.38
USP28-215ENST00000545608 HES5Q5TA89 166 aa6.46□□□□□ -1.38
USP28-215ENST00000545608 IL34Q6ZMJ4 242 aa6.46□□□□□ -1.38
USP28-215ENST00000545608 PRSS48Q7RTY5 328 aa6.46□□□□□ -1.38
USP28-215ENST00000545608 IQCF2Q8IXL9 164 aa6.46□□□□□ -1.38
USP28-215ENST00000545608 CADM3Q8N126 398 aa6.46□□□□□ -1.38
USP28-215ENST00000545608 OR56B1Q8NGI3 324 aa6.46□□□□□ -1.38
USP28-215ENST00000545608 MAFIPQ8WZ33 124 aa6.46□□□□□ -1.38
USP28-215ENST00000545608 CABLES2Q9BTV7 478 aa6.46□□□□□ -1.38
USP28-215ENST00000545608 OR2D2Q9H210 308 aa6.46□□□□□ -1.38
USP28-215ENST00000545608 TENM2Q9NT68 2774 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 TRBV6-7A0A0A0MS04 114 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 A0A0G2JLM5 398 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 A8MZ25 164 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 RGS10O43665 173 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 TRBV12-3P01733 135 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 FCGR3AP08637 254 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 APELAP0DMC3 54 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 GNB3P16520 340 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 ZP3P21754 424 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 PSMA1P25786 263 aaKnown RBP6.45□□□□□ -1.38
USP28-215ENST00000545608 SYNJ2BPP57105 145 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 GNG2P59768 71 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 MRPS15P82914 257 aaKnown RBP6.45□□□□□ -1.38
USP28-215ENST00000545608 DYRK1AQ13627 763 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 ZFAND6Q6FIF0 208 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 ZNF343Q6P1L6 599 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 OR9G4Q8NGQ1 327 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 SUN5Q8TC36 379 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 FCGR1BQ92637 280 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 RAB3CQ96E17 227 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 HARBI1Q96MB7 349 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 TMEM68Q96MH6 324 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 MGLLQ99685 303 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 FUNDC2Q9BWH2 189 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 TINAGL1Q9GZM7 467 aaPredicted RBP6.45□□□□□ -1.38
USP28-215ENST00000545608 CCDC90BQ9GZT6 254 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 EDA2RQ9HAV5 297 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 PEF1Q9UBV8 284 aaKnown RBP6.45□□□□□ -1.38
USP28-215ENST00000545608 ZNF230Q9UIE0 474 aaPredicted RBP6.45□□□□□ -1.38
USP28-215ENST00000545608 RAB22AQ9UL26 194 aa6.45□□□□□ -1.38
USP28-215ENST00000545608 A0A075B6Q4 140 aa6.44□□□□□ -1.38
USP28-215ENST00000545608 IGKV1D-8A0A087WSZ0 117 aa6.44□□□□□ -1.38
USP28-215ENST00000545608 A0A0B4J203 849 aa6.44□□□□□ -1.38
USP28-215ENST00000545608 MSGN1A6NI15 193 aa6.44□□□□□ -1.38
USP28-215ENST00000545608 CENPXA8MT69 81 aa6.44□□□□□ -1.38
USP28-215ENST00000545608 RAB27BO00194 218 aa6.44□□□□□ -1.38
USP28-215ENST00000545608 MFNGO00587 321 aa6.44□□□□□ -1.38
USP28-215ENST00000545608 UPK1BO75841 260 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms