RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 TMPRSS5Q9H3S3 457 aa14.87□□□□□ -0.03
VIM-209ENST00000544301 RAB9BQ9NP90 201 aa14.87□□□□□ -0.03
VIM-209ENST00000544301 RP1L1Q8IWN7 2480 aaPredicted RBP14.87□□□□□ -0.03
VIM-209ENST00000544301 HCFC1P51610 2035 aa14.87□□□□□ -0.03
VIM-209ENST00000544301 TRGV10A0A0A0MS01 117 aa14.87□□□□□ -0.03
VIM-209ENST00000544301 TRAV3A0A0B4J244 114 aa14.87□□□□□ -0.03
VIM-209ENST00000544301 TNFSF4P23510 183 aa14.87□□□□□ -0.03
VIM-209ENST00000544301 CD81P60033 236 aa14.87□□□□□ -0.03
VIM-209ENST00000544301 RELBQ01201 579 aa14.87□□□□□ -0.03
VIM-209ENST00000544301 PDLIM3Q53GG5 364 aaPredicted RBP14.87□□□□□ -0.03
VIM-209ENST00000544301 DOLPP1Q86YN1 238 aa14.87□□□□□ -0.03
VIM-209ENST00000544301 NUP37Q8NFH4 326 aa14.87□□□□□ -0.03
VIM-209ENST00000544301 ACTR3CQ9C0K3 210 aaPredicted RBP14.87□□□□□ -0.03
VIM-209ENST00000544301 ANKRD11Q6UB99 2663 aaPredicted RBP14.87□□□□□ -0.03
VIM-209ENST00000544301 A0A0G2JNJ9 132 aa14.86□□□□□ -0.03
VIM-209ENST00000544301 IGHV2-5P01817 119 aa14.86□□□□□ -0.03
VIM-209ENST00000544301 CXCL1P09341 107 aa14.86□□□□□ -0.03
VIM-209ENST00000544301 VDAC2P45880 294 aaPredicted RBP14.86□□□□□ -0.03
VIM-209ENST00000544301 ERVFRD-1P60508 538 aa14.86□□□□□ -0.03
VIM-209ENST00000544301 TLE1Q04724 770 aa14.86□□□□□ -0.03
VIM-209ENST00000544301 TCF23Q7RTU1 214 aa14.86□□□□□ -0.03
VIM-209ENST00000544301 CCL13Q99616 98 aa14.86□□□□□ -0.03
VIM-209ENST00000544301 SDF2L1Q9HCN8 221 aa14.86□□□□□ -0.03
VIM-209ENST00000544301 TMEM140Q9NV12 185 aa14.86□□□□□ -0.03
VIM-209ENST00000544301 Q9UFV3 132 aa14.86□□□□□ -0.03
VIM-209ENST00000544301 URGCP-MRPS24S4R325 110 aa14.86□□□□□ -0.03
VIM-209ENST00000544301 BSNQ9UPA5 3926 aa14.86□□□□□ -0.03
VIM-209ENST00000544301 C17orf112F2Z3M2 114 aa14.86□□□□□ -0.03
VIM-209ENST00000544301 GYPAP02724 150 aa14.86□□□□□ -0.03
VIM-209ENST00000544301 RPS10P46783 165 aaKnown RBP14.86□□□□□ -0.03
VIM-209ENST00000544301 MEF2BQ02080 365 aaPredicted RBP14.86□□□□□ -0.03
VIM-209ENST00000544301 TGIF2LYQ8IUE0 185 aa14.86□□□□□ -0.03
VIM-209ENST00000544301 Q8N7P7 452 aa14.86□□□□□ -0.03
VIM-209ENST00000544301 OR4S2Q8NH73 311 aa14.86□□□□□ -0.03
VIM-209ENST00000544301 ABHD17AQ96GS6 310 aa14.86□□□□□ -0.03
VIM-209ENST00000544301 METTL1Q9UBP6 276 aaKnown RBP14.86□□□□□ -0.03
VIM-209ENST00000544301 WDR83OSQ9Y284 106 aa14.86□□□□□ -0.03
VIM-209ENST00000544301 PLCE1Q9P212 2302 aa14.86□□□□□ -0.03
VIM-209ENST00000544301 DSCAML1Q8TD84 2053 aa14.85□□□□□ -0.03
VIM-209ENST00000544301 SAA2-SAA4A0A096LPE2 208 aa14.85□□□□□ -0.03
VIM-209ENST00000544301 IFNA10P01566 189 aa14.85□□□□□ -0.03
VIM-209ENST00000544301 SAA2P0DJI9 122 aaPredicted RBP14.85□□□□□ -0.03
VIM-209ENST00000544301 CD1BP29016 333 aa14.85□□□□□ -0.03
VIM-209ENST00000544301 MEOX2P50222 304 aa14.85□□□□□ -0.03
VIM-209ENST00000544301 TDGF1P3P51864 188 aa14.85□□□□□ -0.03
VIM-209ENST00000544301 RPP30P78346 268 aaKnown RBP14.85□□□□□ -0.03
VIM-209ENST00000544301 WDR25Q64LD2 544 aaPredicted RBP14.85□□□□□ -0.03
VIM-209ENST00000544301 ZNF788Q6ZQV5 615 aa14.85□□□□□ -0.03
VIM-209ENST00000544301 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.85□□□□□ -0.03
VIM-209ENST00000544301 RAB24Q969Q5 203 aa14.85□□□□□ -0.03
VIM-209ENST00000544301 HEYLQ9NQ87 328 aaPredicted RBP14.85□□□□□ -0.03
VIM-209ENST00000544301 ICE1Q9Y2F5 2266 aa14.85□□□□□ -0.03
VIM-209ENST00000544301 RAI1Q7Z5J4 1906 aaPredicted RBP14.85□□□□□ -0.03
VIM-209ENST00000544301 PCP4L1A6NKN8 68 aa14.84□□□□□ -0.03
VIM-209ENST00000544301 PRRG2O14669 202 aa14.84□□□□□ -0.03
VIM-209ENST00000544301 PSMB3P49720 205 aa14.84□□□□□ -0.03
VIM-209ENST00000544301 FABP9Q0Z7S8 132 aa14.84□□□□□ -0.03
VIM-209ENST00000544301 TMEM108Q6UXF1 575 aa14.84□□□□□ -0.03
VIM-209ENST00000544301 FAM216BQ8N7L0 139 aa14.84□□□□□ -0.03
VIM-209ENST00000544301 ZNF251Q9BRH9 671 aa14.84□□□□□ -0.03
VIM-209ENST00000544301 DCAF16Q9NXF7 216 aa14.84□□□□□ -0.03
VIM-209ENST00000544301 CEP250Q9BV73 2442 aa14.84□□□□□ -0.03
VIM-209ENST00000544301 TGIF2-C20orf24A0A0A6YYL0 155 aa14.84□□□□□ -0.03
VIM-209ENST00000544301 C16orf97H3BN30 126 aa14.84□□□□□ -0.03
VIM-209ENST00000544301 RRHO14718 337 aa14.84□□□□□ -0.03
VIM-209ENST00000544301 ZNF439Q8NDP4 499 aa14.84□□□□□ -0.03
VIM-209ENST00000544301 DIRC2Q96SL1 478 aa14.84□□□□□ -0.03
VIM-209ENST00000544301 GFRA3O60609 400 aa14.83□□□□□ -0.04
VIM-209ENST00000544301 THBS3P49746 956 aa14.83□□□□□ -0.04
VIM-209ENST00000544301 ACOT6Q3I5F7 207 aaPredicted RBP14.83□□□□□ -0.04
VIM-209ENST00000544301 TEX36Q5VZQ5 186 aa14.83□□□□□ -0.04
VIM-209ENST00000544301 IQCF2Q8IXL9 164 aa14.83□□□□□ -0.04
VIM-209ENST00000544301 GATAD1Q8WUU5 269 aa14.83□□□□□ -0.04
VIM-209ENST00000544301 LINC00574Q9H8X3 128 aa14.83□□□□□ -0.04
VIM-209ENST00000544301 MANBALQ9NQG1 85 aa14.83□□□□□ -0.04
VIM-209ENST00000544301 TMEM242Q9NWH2 141 aa14.83□□□□□ -0.04
VIM-209ENST00000544301 IDI2-AS1Q9NZ38 188 aa14.83□□□□□ -0.04
VIM-209ENST00000544301 TP53TG5Q9Y2B4 290 aa14.83□□□□□ -0.04
VIM-209ENST00000544301 TANC2Q9HCD6 1990 aa14.83□□□□□ -0.04
VIM-209ENST00000544301 GVINP1Q7Z2Y8 2422 aa14.83□□□□□ -0.04
VIM-209ENST00000544301 AP4M1O00189 453 aa14.83□□□□□ -0.04
VIM-209ENST00000544301 CYB5BO43169 146 aa14.83□□□□□ -0.04
VIM-209ENST00000544301 IRF2P14316 349 aa14.83□□□□□ -0.04
VIM-209ENST00000544301 MRPS11P82912 194 aaKnown RBP14.83□□□□□ -0.04
VIM-209ENST00000544301 WFDC8Q8IUA0 241 aa14.83□□□□□ -0.04
VIM-209ENST00000544301 LYG1Q8N1E2 194 aa14.83□□□□□ -0.04
VIM-209ENST00000544301 CISD2Q8N5K1 135 aaKnown RBP14.83□□□□□ -0.04
VIM-209ENST00000544301 ZNF383Q8NA42 475 aa14.83□□□□□ -0.04
VIM-209ENST00000544301 CORO2AQ92828 525 aa14.83□□□□□ -0.04
VIM-209ENST00000544301 ELOVL5Q9NYP7 299 aa14.83□□□□□ -0.04
VIM-209ENST00000544301 TCF19Q9Y242 345 aa14.83□□□□□ -0.04
VIM-209ENST00000544301 CUL9Q8IWT3 2517 aa14.82□□□□□ -0.04
VIM-209ENST00000544301 DPRXA6NFQ7 191 aa14.82□□□□□ -0.04
VIM-209ENST00000544301 ZNF729A6NN14 1252 aaPredicted RBP14.82□□□□□ -0.04
VIM-209ENST00000544301 PRSS46E5RG02 174 aa14.82□□□□□ -0.04
VIM-209ENST00000544301 DEFA4P12838 97 aa14.82□□□□□ -0.04
VIM-209ENST00000544301 ABHD12Q8N2K0 398 aa14.82□□□□□ -0.04
VIM-209ENST00000544301 TMEM170AQ8WVE7 144 aa14.82□□□□□ -0.04
VIM-209ENST00000544301 SMIM7Q9BQ49 75 aa14.82□□□□□ -0.04
VIM-209ENST00000544301 GGACTQ9BVM4 153 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms