RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 ZNF580Q9UK33 172 aa13.95□□□□□ -0.18
CLSTN3-210ENST00000540931 TEX13DA0A0J9YY54 714 aaPredicted RBP13.94□□□□□ -0.18
CLSTN3-210ENST00000540931 CLPSL1A2RUU4 121 aa13.94□□□□□ -0.18
CLSTN3-210ENST00000540931 RPL30P62888 115 aaKnown RBP13.94□□□□□ -0.18
CLSTN3-210ENST00000540931 SRPXP78539 464 aa13.94□□□□□ -0.18
CLSTN3-210ENST00000540931 TMEM128Q5BJH2 165 aa13.94□□□□□ -0.18
CLSTN3-210ENST00000540931 Q6ZSV7 163 aa13.94□□□□□ -0.18
CLSTN3-210ENST00000540931 C19orf24Q9BVV8 132 aa13.94□□□□□ -0.18
CLSTN3-210ENST00000540931 METTL1Q9UBP6 276 aaKnown RBP13.94□□□□□ -0.18
CLSTN3-210ENST00000540931 C3orf85A0A1B0GTC6 90 aa13.93□□□□□ -0.18
CLSTN3-210ENST00000540931 IGHG2P01859 326 aa13.93□□□□□ -0.18
CLSTN3-210ENST00000540931 MAS1LP35410 378 aa13.93□□□□□ -0.18
CLSTN3-210ENST00000540931 F2RL1P55085 397 aa13.93□□□□□ -0.18
CLSTN3-210ENST00000540931 ASAH1Q13510 395 aa13.93□□□□□ -0.18
CLSTN3-210ENST00000540931 PSG5Q15238 335 aa13.93□□□□□ -0.18
CLSTN3-210ENST00000540931 POU2AF1Q16633 256 aa13.93□□□□□ -0.18
CLSTN3-210ENST00000540931 PPP1R27Q86WC6 154 aa13.93□□□□□ -0.18
CLSTN3-210ENST00000540931 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.93□□□□□ -0.18
CLSTN3-210ENST00000540931 RHOVQ96L33 236 aa13.93□□□□□ -0.18
CLSTN3-210ENST00000540931 TMEM68Q96MH6 324 aa13.93□□□□□ -0.18
CLSTN3-210ENST00000540931 PALMDQ9NP74 551 aa13.93□□□□□ -0.18
CLSTN3-210ENST00000540931 CACFD1Q9UGQ2 172 aa13.93□□□□□ -0.18
CLSTN3-210ENST00000540931 HAX1O00165 279 aa13.92□□□□□ -0.18
CLSTN3-210ENST00000540931 AP4M1O00189 453 aa13.92□□□□□ -0.18
CLSTN3-210ENST00000540931 ACTL6BO94805 426 aa13.92□□□□□ -0.18
CLSTN3-210ENST00000540931 NDUFB6O95139 128 aa13.92□□□□□ -0.18
CLSTN3-210ENST00000540931 VDAC2P45880 294 aaPredicted RBP13.92□□□□□ -0.18
CLSTN3-210ENST00000540931 TMEM267Q0VDI3 215 aaPredicted RBP13.92□□□□□ -0.18
CLSTN3-210ENST00000540931 ZNF562Q6V9R5 426 aa13.92□□□□□ -0.18
CLSTN3-210ENST00000540931 SLC35E3Q7Z769 313 aa13.92□□□□□ -0.18
CLSTN3-210ENST00000540931 MMD2Q8IY49 270 aa13.92□□□□□ -0.18
CLSTN3-210ENST00000540931 CENPSQ8N2Z9 138 aa13.92□□□□□ -0.18
CLSTN3-210ENST00000540931 CHPT1Q8WUD6 406 aa13.92□□□□□ -0.18
CLSTN3-210ENST00000540931 GALNT14Q96FL9 552 aa13.92□□□□□ -0.18
CLSTN3-210ENST00000540931 RTBDNQ9BSG5 229 aaPredicted RBP13.92□□□□□ -0.18
CLSTN3-210ENST00000540931 C5orf66Q9H5L9 145 aa13.92□□□□□ -0.18
CLSTN3-210ENST00000540931 BET1LQ9NYM9 111 aa13.92□□□□□ -0.18
CLSTN3-210ENST00000540931 SIGLEC9Q9Y336 463 aa13.92□□□□□ -0.18
CLSTN3-210ENST00000540931 CRYM-AS1A6NIL9 109 aa13.91□□□□□ -0.18
CLSTN3-210ENST00000540931 OR2A4O95047 310 aa13.91□□□□□ -0.18
CLSTN3-210ENST00000540931 BLCAPP62952 87 aa13.91□□□□□ -0.18
CLSTN3-210ENST00000540931 SLC35B1P78383 322 aa13.91□□□□□ -0.18
CLSTN3-210ENST00000540931 C9orf152Q5JTZ5 239 aa13.91□□□□□ -0.18
CLSTN3-210ENST00000540931 DMBX1Q8NFW5 382 aa13.91□□□□□ -0.18
CLSTN3-210ENST00000540931 LINC01006Q8NI28 216 aa13.91□□□□□ -0.18
CLSTN3-210ENST00000540931 OR2A7Q96R45 310 aa13.91□□□□□ -0.18
CLSTN3-210ENST00000540931 NAA60Q9H7X0 242 aa13.91□□□□□ -0.18
CLSTN3-210ENST00000540931 ZNF702PQ9H963 129 aa13.91□□□□□ -0.18
CLSTN3-210ENST00000540931 FKBP11Q9NYL4 201 aa13.91□□□□□ -0.18
CLSTN3-210ENST00000540931 RNF114Q9Y508 228 aa13.91□□□□□ -0.18
CLSTN3-210ENST00000540931 FAM240BA0A1B0GVZ2 78 aa13.9□□□□□ -0.18
CLSTN3-210ENST00000540931 SLC25A17O43808 307 aa13.9□□□□□ -0.18
CLSTN3-210ENST00000540931 IGLV2-23P01705 113 aa13.9□□□□□ -0.18
CLSTN3-210ENST00000540931 AMY1AP04745 511 aa13.9□□□□□ -0.18
CLSTN3-210ENST00000540931 SLC6A1P30531 599 aa13.9□□□□□ -0.18
CLSTN3-210ENST00000540931 LPAR6P43657 344 aa13.9□□□□□ -0.18
CLSTN3-210ENST00000540931 LINC00205P59089 165 aa13.9□□□□□ -0.18
CLSTN3-210ENST00000540931 SRSF2Q01130 221 aaKnown RBP13.9□□□□□ -0.18
CLSTN3-210ENST00000540931 FAM219AQ8IW50 185 aa13.9□□□□□ -0.18
CLSTN3-210ENST00000540931 COMMD1Q8N668 190 aa13.9□□□□□ -0.18
CLSTN3-210ENST00000540931 IL22RA2Q969J5 263 aa13.9□□□□□ -0.18
CLSTN3-210ENST00000540931 MRGPRFQ96AM1 343 aa13.9□□□□□ -0.18
CLSTN3-210ENST00000540931 TMEM222Q9H0R3 208 aa13.9□□□□□ -0.18
CLSTN3-210ENST00000540931 ALX4Q9H161 411 aaPredicted RBP13.9□□□□□ -0.18
CLSTN3-210ENST00000540931 FBXL15Q9H469 300 aa13.9□□□□□ -0.18
CLSTN3-210ENST00000540931 LINC00854A0A1B0GVQ3 168 aa13.89□□□□□ -0.19
CLSTN3-210ENST00000540931 MARCH11A6NNE9 402 aa13.89□□□□□ -0.19
CLSTN3-210ENST00000540931 PLA2G10O15496 165 aa13.89□□□□□ -0.19
CLSTN3-210ENST00000540931 IGF1P05019 195 aa13.89□□□□□ -0.19
CLSTN3-210ENST00000540931 PI3P19957 117 aa13.89□□□□□ -0.19
CLSTN3-210ENST00000540931 UCP1P25874 307 aa13.89□□□□□ -0.19
CLSTN3-210ENST00000540931 RAB25P57735 213 aa13.89□□□□□ -0.19
CLSTN3-210ENST00000540931 TRIM16LQ309B1 348 aa13.89□□□□□ -0.19
CLSTN3-210ENST00000540931 OR2B11Q5JQS5 317 aa13.89□□□□□ -0.19
CLSTN3-210ENST00000540931 THOC7Q6I9Y2 204 aaKnown RBP13.89□□□□□ -0.19
CLSTN3-210ENST00000540931 TMEM167AQ8TBQ9 72 aa13.89□□□□□ -0.19
CLSTN3-210ENST00000540931 R3HDM4Q96D70 268 aa13.89□□□□□ -0.19
CLSTN3-210ENST00000540931 OR51J1Q9H342 316 aa13.89□□□□□ -0.19
CLSTN3-210ENST00000540931 DUXBA0A1W2PPF3 345 aa13.88□□□□□ -0.19
CLSTN3-210ENST00000540931 RAMP3O60896 148 aa13.88□□□□□ -0.19
CLSTN3-210ENST00000540931 SNAPC5O75971 98 aa13.88□□□□□ -0.19
CLSTN3-210ENST00000540931 KBTBD11O94819 623 aa13.88□□□□□ -0.19
CLSTN3-210ENST00000540931 CNIH1O95406 144 aa13.88□□□□□ -0.19
CLSTN3-210ENST00000540931 CRYGBP07316 175 aa13.88□□□□□ -0.19
CLSTN3-210ENST00000540931 SAA1P0DJI8 122 aaPredicted RBP13.88□□□□□ -0.19
CLSTN3-210ENST00000540931 AKR1C4P17516 323 aa13.88□□□□□ -0.19
CLSTN3-210ENST00000540931 BRWD1-AS2P59051 145 aa13.88□□□□□ -0.19
CLSTN3-210ENST00000540931 RELBQ01201 579 aa13.88□□□□□ -0.19
CLSTN3-210ENST00000540931 C12orf54Q6X4T0 127 aa13.88□□□□□ -0.19
CLSTN3-210ENST00000540931 SLC25A42Q86VD7 318 aa13.88□□□□□ -0.19
CLSTN3-210ENST00000540931 PUSL1Q8N0Z8 303 aaKnown RBP13.88□□□□□ -0.19
CLSTN3-210ENST00000540931 ENKURQ8TC29 256 aa13.88□□□□□ -0.19
CLSTN3-210ENST00000540931 RRNAD1Q96FB5 475 aaKnown RBP13.88□□□□□ -0.19
CLSTN3-210ENST00000540931 RITA1Q96K30 269 aa13.88□□□□□ -0.19
CLSTN3-210ENST00000540931 VSIG4Q9Y279 399 aa13.88□□□□□ -0.19
CLSTN3-210ENST00000540931 SRRM4A7MD48 611 aaKnown RBP13.87□□□□□ -0.19
CLSTN3-210ENST00000540931 CDS2O95674 445 aa13.87□□□□□ -0.19
CLSTN3-210ENST00000540931 TCRBP04435 133 aa13.87□□□□□ -0.19
CLSTN3-210ENST00000540931 VDAC1P21796 283 aa13.87□□□□□ -0.19
CLSTN3-210ENST00000540931 CNTFRP26992 372 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms