RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 RPLP1P05386 114 aaKnown RBP12.33□□□□□ -0.44
RPAIN-206ENST00000539417 PPP5CP53041 499 aa12.33□□□□□ -0.44
RPAIN-206ENST00000539417 UBE2KP61086 200 aa12.33□□□□□ -0.44
RPAIN-206ENST00000539417 GNB1P62873 340 aa12.33□□□□□ -0.44
RPAIN-206ENST00000539417 CBX3Q13185 183 aa12.33□□□□□ -0.44
RPAIN-206ENST00000539417 ECSCRQ19T08 205 aa12.33□□□□□ -0.44
RPAIN-206ENST00000539417 ZNF562Q6V9R5 426 aa12.33□□□□□ -0.44
RPAIN-206ENST00000539417 NDUFA11Q86Y39 141 aa12.33□□□□□ -0.44
RPAIN-206ENST00000539417 OR4X2Q8NGF9 303 aa12.33□□□□□ -0.44
RPAIN-206ENST00000539417 OR4C16Q8NGL9 310 aa12.33□□□□□ -0.44
RPAIN-206ENST00000539417 OR4S2Q8NH73 311 aa12.33□□□□□ -0.44
RPAIN-206ENST00000539417 KLK15Q9H2R5 256 aa12.33□□□□□ -0.44
RPAIN-206ENST00000539417 NUBP2Q9Y5Y2 271 aa12.33□□□□□ -0.44
RPAIN-206ENST00000539417 TRAV41A0A0B4J266 112 aa12.32□□□□□ -0.44
RPAIN-206ENST00000539417 ANKRD20A5PA0PJZ0 165 aa12.32□□□□□ -0.44
RPAIN-206ENST00000539417 GPR31O00270 319 aa12.32□□□□□ -0.44
RPAIN-206ENST00000539417 IFNA6P05013 189 aa12.32□□□□□ -0.44
RPAIN-206ENST00000539417 CSF1P09603 554 aa12.32□□□□□ -0.44
RPAIN-206ENST00000539417 MYOD1P15172 320 aa12.32□□□□□ -0.44
RPAIN-206ENST00000539417 VDAC1P21796 283 aa12.32□□□□□ -0.44
RPAIN-206ENST00000539417 S100A5P33763 92 aa12.32□□□□□ -0.44
RPAIN-206ENST00000539417 CRIP2P52943 208 aaPredicted RBP12.32□□□□□ -0.44
RPAIN-206ENST00000539417 SSBP1Q04837 148 aaKnown RBP12.32□□□□□ -0.44
RPAIN-206ENST00000539417 FXYD3Q14802 87 aa12.32□□□□□ -0.44
RPAIN-206ENST00000539417 PRSS8Q16651 343 aa12.32□□□□□ -0.44
RPAIN-206ENST00000539417 PYDC2Q56P42 97 aa12.32□□□□□ -0.44
RPAIN-206ENST00000539417 KHDC1LQ5JSQ8 128 aa12.32□□□□□ -0.44
RPAIN-206ENST00000539417 TREML4Q6UXN2 200 aa12.32□□□□□ -0.44
RPAIN-206ENST00000539417 SSX9Q7RTT3 188 aa12.32□□□□□ -0.44
RPAIN-206ENST00000539417 TEX45Q8NA69 505 aa12.32□□□□□ -0.44
RPAIN-206ENST00000539417 GRPEL2Q8TAA5 225 aa12.32□□□□□ -0.44
RPAIN-206ENST00000539417 TRIM63Q969Q1 353 aa12.32□□□□□ -0.44
RPAIN-206ENST00000539417 ZNF430Q9H8G1 570 aaPredicted RBP12.32□□□□□ -0.44
RPAIN-206ENST00000539417 S1PR2O95136 353 aa12.31□□□□□ -0.44
RPAIN-206ENST00000539417 IGHG4P01861 327 aa12.31□□□□□ -0.44
RPAIN-206ENST00000539417 RPA2P15927 270 aa12.31□□□□□ -0.44
RPAIN-206ENST00000539417 TBPP20226 339 aa12.31□□□□□ -0.44
RPAIN-206ENST00000539417 UCP3P55916 312 aa12.31□□□□□ -0.44
RPAIN-206ENST00000539417 C2orf68Q2NKX9 166 aa12.31□□□□□ -0.44
RPAIN-206ENST00000539417 VMA21Q3ZAQ7 101 aa12.31□□□□□ -0.44
RPAIN-206ENST00000539417 SCGB2B2Q4G0G5 96 aa12.31□□□□□ -0.44
RPAIN-206ENST00000539417 ZNF585BQ52M93 769 aa12.31□□□□□ -0.44
RPAIN-206ENST00000539417 C10orf55Q5SWW7 151 aa12.31□□□□□ -0.44
RPAIN-206ENST00000539417 ASPHD1Q5U4P2 390 aa12.31□□□□□ -0.44
RPAIN-206ENST00000539417 ARRDC1Q8N5I2 433 aa12.31□□□□□ -0.44
RPAIN-206ENST00000539417 MINDY2Q8NBR6 621 aa12.31□□□□□ -0.44
RPAIN-206ENST00000539417 LFNGQ8NES3 379 aa12.31□□□□□ -0.44
RPAIN-206ENST00000539417 ABHD5Q8WTS1 349 aa12.31□□□□□ -0.44
RPAIN-206ENST00000539417 ARPC1AQ92747 370 aa12.31□□□□□ -0.44
RPAIN-206ENST00000539417 THAP7Q9BT49 309 aaPredicted RBP12.31□□□□□ -0.44
RPAIN-206ENST00000539417 RABL2AQ9UBK7 228 aaPredicted RBP12.31□□□□□ -0.44
RPAIN-206ENST00000539417 ZNF580Q9UK33 172 aa12.31□□□□□ -0.44
RPAIN-206ENST00000539417 RABL2BQ9UNT1 228 aa12.31□□□□□ -0.44
RPAIN-206ENST00000539417 IGLV1-40P01703 118 aa12.3□□□□□ -0.44
RPAIN-206ENST00000539417 APELAP0DMC3 54 aa12.3□□□□□ -0.44
RPAIN-206ENST00000539417 PSMB8P28062 276 aa12.3□□□□□ -0.44
RPAIN-206ENST00000539417 SLC35B1P78383 322 aa12.3□□□□□ -0.44
RPAIN-206ENST00000539417 CATR1Q13166 79 aa12.3□□□□□ -0.44
RPAIN-206ENST00000539417 KIAA0141Q14154 515 aaPredicted RBP12.3□□□□□ -0.44
RPAIN-206ENST00000539417 TEX38Q6PEX7 206 aa12.3□□□□□ -0.44
RPAIN-206ENST00000539417 TBC1D26Q86UD7 250 aa12.3□□□□□ -0.44
RPAIN-206ENST00000539417 PUSL1Q8N0Z8 303 aaKnown RBP12.3□□□□□ -0.44
RPAIN-206ENST00000539417 MARCH1Q8TCQ1 289 aa12.3□□□□□ -0.44
RPAIN-206ENST00000539417 TSSC4Q9Y5U2 329 aaPredicted RBP12.3□□□□□ -0.44
RPAIN-206ENST00000539417 TNCP24821 2201 aa12.3□□□□□ -0.44
RPAIN-206ENST00000539417 TRAV3A0A0B4J244 114 aa12.29□□□□□ -0.44
RPAIN-206ENST00000539417 A0A1W2PN81 502 aa12.29□□□□□ -0.44
RPAIN-206ENST00000539417 E7EUB6 86 aa12.29□□□□□ -0.44
RPAIN-206ENST00000539417 AKAIN1P0CW23 69 aa12.29□□□□□ -0.44
RPAIN-206ENST00000539417 PGAM2P15259 253 aa12.29□□□□□ -0.44
RPAIN-206ENST00000539417 CHRNA7P36544 502 aa12.29□□□□□ -0.44
RPAIN-206ENST00000539417 ETV6P41212 452 aa12.29□□□□□ -0.44
RPAIN-206ENST00000539417 RPL23AP62750 156 aaKnown RBP12.29□□□□□ -0.44
RPAIN-206ENST00000539417 FOXE3Q13461 319 aa12.29□□□□□ -0.44
RPAIN-206ENST00000539417 KLF9Q13886 244 aaPredicted RBP12.29□□□□□ -0.44
RPAIN-206ENST00000539417 TNXAQ16473 311 aa12.29□□□□□ -0.44
RPAIN-206ENST00000539417 UNQ5815/PRO19632Q6UWF5 114 aa12.29□□□□□ -0.44
RPAIN-206ENST00000539417 SLC38A6Q8IZM9 456 aa12.29□□□□□ -0.44
RPAIN-206ENST00000539417 Q8N402 240 aa12.29□□□□□ -0.44
RPAIN-206ENST00000539417 RNF152Q8N8N0 203 aa12.29□□□□□ -0.44
RPAIN-206ENST00000539417 OR13C8Q8NGS7 320 aa12.29□□□□□ -0.44
RPAIN-206ENST00000539417 TERB2Q8NHR7 220 aa12.29□□□□□ -0.44
RPAIN-206ENST00000539417 R3HDM4Q96D70 268 aa12.29□□□□□ -0.44
RPAIN-206ENST00000539417 RHOVQ96L33 236 aa12.29□□□□□ -0.44
RPAIN-206ENST00000539417 SDHCQ99643 169 aaPredicted RBP12.29□□□□□ -0.44
RPAIN-206ENST00000539417 SRRQ9GZT4 340 aa12.29□□□□□ -0.44
RPAIN-206ENST00000539417 MGAM2Q2M2H8 2515 aa12.29□□□□□ -0.44
RPAIN-206ENST00000539417 A0A1B0GW64 132 aa12.28□□□□□ -0.44
RPAIN-206ENST00000539417 RBFOX2O43251 390 aaKnown RBP eCLIP12.28□□□□□ -0.44
RPAIN-206ENST00000539417 KBTBD11O94819 623 aa12.28□□□□□ -0.44
RPAIN-206ENST00000539417 OR2A4O95047 310 aa12.28□□□□□ -0.44
RPAIN-206ENST00000539417 CNIH1O95406 144 aa12.28□□□□□ -0.44
RPAIN-206ENST00000539417 F2RP25116 425 aa12.28□□□□□ -0.44
RPAIN-206ENST00000539417 KIR2DS2P43631 304 aa12.28□□□□□ -0.44
RPAIN-206ENST00000539417 LPAR6P43657 344 aa12.28□□□□□ -0.44
RPAIN-206ENST00000539417 CMTM1Q8IZ96 169 aa12.28□□□□□ -0.44
RPAIN-206ENST00000539417 OR51S1Q8NGJ8 323 aa12.28□□□□□ -0.44
RPAIN-206ENST00000539417 TMEM167AQ8TBQ9 72 aa12.28□□□□□ -0.44
RPAIN-206ENST00000539417 DUX3Q96PT4 197 aa12.28□□□□□ -0.44
RPAIN-206ENST00000539417 OR2A7Q96R45 310 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms