RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 ACOT12Q8WYK0 555 aa10.21□□□□□ -0.77
SS18-204ENST00000539244 RAB3CQ96E17 227 aa10.21□□□□□ -0.77
SS18-204ENST00000539244 WFDC10AQ9H1F0 79 aa10.21□□□□□ -0.77
SS18-204ENST00000539244 ZNF430Q9H8G1 570 aaPredicted RBP10.21□□□□□ -0.77
SS18-204ENST00000539244 V9GY05 133 aa10.21□□□□□ -0.77
SS18-204ENST00000539244 ERICH4A6NGS2 130 aa10.2□□□□□ -0.78
SS18-204ENST00000539244 MFNGO00587 321 aa10.2□□□□□ -0.78
SS18-204ENST00000539244 SAA1P0DJI8 122 aaPredicted RBP10.2□□□□□ -0.78
SS18-204ENST00000539244 FOLR2P14207 255 aa10.2□□□□□ -0.78
SS18-204ENST00000539244 PSMD7P51665 324 aa10.2□□□□□ -0.78
SS18-204ENST00000539244 RPS25P62851 125 aaKnown RBP10.2□□□□□ -0.78
SS18-204ENST00000539244 RCN1Q15293 331 aa10.2□□□□□ -0.78
SS18-204ENST00000539244 C15orf32Q32M92 178 aa10.2□□□□□ -0.78
SS18-204ENST00000539244 SLC25A42Q86VD7 318 aa10.2□□□□□ -0.78
SS18-204ENST00000539244 MMD2Q8IY49 270 aa10.2□□□□□ -0.78
SS18-204ENST00000539244 H1FOOQ8IZA3 346 aaPredicted RBP10.2□□□□□ -0.78
SS18-204ENST00000539244 RBM7Q9Y580 266 aaKnown RBP10.2□□□□□ -0.78
SS18-204ENST00000539244 FRAS1Q86XX4 4008 aa10.19□□□□□ -0.78
SS18-204ENST00000539244 RAB27BO00194 218 aa10.19□□□□□ -0.78
SS18-204ENST00000539244 EBAG9O00559 213 aa10.19□□□□□ -0.78
SS18-204ENST00000539244 GGCTO75223 188 aaKnown RBP10.19□□□□□ -0.78
SS18-204ENST00000539244 ACTL6BO94805 426 aa10.19□□□□□ -0.78
SS18-204ENST00000539244 HIST1H1DP16402 221 aaKnown RBP10.19□□□□□ -0.78
SS18-204ENST00000539244 CALRP27797 417 aaKnown RBP10.19□□□□□ -0.78
SS18-204ENST00000539244 GPHB5Q86YW7 130 aa10.19□□□□□ -0.78
SS18-204ENST00000539244 OR10R2Q8NGX6 335 aa10.19□□□□□ -0.78
SS18-204ENST00000539244 MAFIPQ8WZ33 124 aa10.19□□□□□ -0.78
SS18-204ENST00000539244 LINC00476Q8WZB0 136 aa10.19□□□□□ -0.78
SS18-204ENST00000539244 WDR89Q96FK6 387 aaPredicted RBP10.19□□□□□ -0.78
SS18-204ENST00000539244 GINS4Q9BRT9 223 aa10.19□□□□□ -0.78
SS18-204ENST00000539244 SCN3BQ9NY72 215 aa10.19□□□□□ -0.78
SS18-204ENST00000539244 ZNF257Q9Y2Q1 563 aa10.19□□□□□ -0.78
SS18-204ENST00000539244 KMT2AQ03164 3969 aa10.18□□□□□ -0.78
SS18-204ENST00000539244 NPIPB5A8MRT5 1133 aa10.18□□□□□ -0.78
SS18-204ENST00000539244 PPP5D1E7EU14 171 aa10.18□□□□□ -0.78
SS18-204ENST00000539244 OR2J3O76001 311 aa10.18□□□□□ -0.78
SS18-204ENST00000539244 GNB3P16520 340 aa10.18□□□□□ -0.78
SS18-204ENST00000539244 EDN2P20800 178 aa10.18□□□□□ -0.78
SS18-204ENST00000539244 CBLN1P23435 193 aa10.18□□□□□ -0.78
SS18-204ENST00000539244 GADD45AP24522 165 aa10.18□□□□□ -0.78
SS18-204ENST00000539244 MLLT11Q13015 90 aaPredicted RBP10.18□□□□□ -0.78
SS18-204ENST00000539244 GUCA2BQ16661 112 aa10.18□□□□□ -0.78
SS18-204ENST00000539244 KLK9Q2XQG4 91 aa10.18□□□□□ -0.78
SS18-204ENST00000539244 C10orf55Q5SWW7 151 aa10.18□□□□□ -0.78
SS18-204ENST00000539244 SLC16A13Q7RTY0 426 aa10.18□□□□□ -0.78
SS18-204ENST00000539244 ZNF645Q8N7E2 425 aa10.18□□□□□ -0.78
SS18-204ENST00000539244 DUSP21Q9H596 190 aa10.18□□□□□ -0.78
SS18-204ENST00000539244 KLK9Q9UKQ9 250 aa10.18□□□□□ -0.78
SS18-204ENST00000539244 IGKV1D-8A0A087WSZ0 117 aa10.17□□□□□ -0.78
SS18-204ENST00000539244 A8MWP6 167 aa10.17□□□□□ -0.78
SS18-204ENST00000539244 TEX22C9J3V5 150 aa10.17□□□□□ -0.78
SS18-204ENST00000539244 OR2C1O95371 312 aa10.17□□□□□ -0.78
SS18-204ENST00000539244 HLA-AP01891 365 aaKnown RBP10.17□□□□□ -0.78
SS18-204ENST00000539244 RAB6AP20340 208 aa10.17□□□□□ -0.78
SS18-204ENST00000539244 FABP5Q01469 135 aa10.17□□□□□ -0.78
SS18-204ENST00000539244 SSX1Q16384 188 aa10.17□□□□□ -0.78
SS18-204ENST00000539244 HES5Q5TA89 166 aa10.17□□□□□ -0.78
SS18-204ENST00000539244 TMEM61Q8N0U2 210 aa10.17□□□□□ -0.78
SS18-204ENST00000539244 CCDC140Q96MF4 163 aa10.17□□□□□ -0.78
SS18-204ENST00000539244 OVOL2Q9BRP0 275 aa10.17□□□□□ -0.78
SS18-204ENST00000539244 ACOT13Q9NPJ3 140 aa10.17□□□□□ -0.78
SS18-204ENST00000539244 TMEM213A2RRL7 107 aa10.16□□□□□ -0.78
SS18-204ENST00000539244 FCGR3BO75015 233 aa10.16□□□□□ -0.78
SS18-204ENST00000539244 SLC22A5O76082 557 aa10.16□□□□□ -0.78
SS18-204ENST00000539244 CRYGCP07315 174 aa10.16□□□□□ -0.78
SS18-204ENST00000539244 ZNF735P0CB33 412 aa10.16□□□□□ -0.78
SS18-204ENST00000539244 HSMCR30P0CW71 290 aa10.16□□□□□ -0.78
SS18-204ENST00000539244 DTYMKP23919 212 aa10.16□□□□□ -0.78
SS18-204ENST00000539244 MAP2K4P45985 399 aa10.16□□□□□ -0.78
SS18-204ENST00000539244 KCTD9Q7L273 389 aa10.16□□□□□ -0.78
SS18-204ENST00000539244 PUSL1Q8N0Z8 303 aaKnown RBP10.16□□□□□ -0.78
SS18-204ENST00000539244 VSTM2AQ8TAG5 236 aa10.16□□□□□ -0.78
SS18-204ENST00000539244 FANCD2OSQ96PS1 177 aa10.16□□□□□ -0.78
SS18-204ENST00000539244 GGTLC1Q9BX51 225 aa10.16□□□□□ -0.78
SS18-204ENST00000539244 OR51E2Q9H255 320 aa10.16□□□□□ -0.78
SS18-204ENST00000539244 VCXQ9H320 206 aa10.16□□□□□ -0.78
SS18-204ENST00000539244 SLC2A9Q9NRM0 540 aa10.16□□□□□ -0.78
SS18-204ENST00000539244 MRPS7Q9Y2R9 242 aaKnown RBP10.16□□□□□ -0.78
SS18-204ENST00000539244 RBMX2Q9Y388 322 aaKnown RBP10.16□□□□□ -0.78
SS18-204ENST00000539244 PRELID3BQ9Y3B1 194 aa10.16□□□□□ -0.78
SS18-204ENST00000539244 TRAV1-2A0A0B4J238 106 aa10.15□□□□□ -0.78
SS18-204ENST00000539244 A0A1B0GW64 132 aa10.15□□□□□ -0.78
SS18-204ENST00000539244 HMX3A6NHT5 357 aa10.15□□□□□ -0.78
SS18-204ENST00000539244 IFITM5A6NNB3 132 aa10.15□□□□□ -0.78
SS18-204ENST00000539244 E7EUB6 86 aa10.15□□□□□ -0.78
SS18-204ENST00000539244 KBTBD11O94819 623 aa10.15□□□□□ -0.78
SS18-204ENST00000539244 IGLV2-14P01704 120 aa10.15□□□□□ -0.78
SS18-204ENST00000539244 HLA-DQB1P01920 261 aa10.15□□□□□ -0.78
SS18-204ENST00000539244 IL6RP08887 468 aaPredicted RBP10.15□□□□□ -0.78
SS18-204ENST00000539244 CD36P16671 472 aa10.15□□□□□ -0.78
SS18-204ENST00000539244 MAS1LP35410 378 aa10.15□□□□□ -0.78
SS18-204ENST00000539244 ARL3P36405 182 aa10.15□□□□□ -0.78
SS18-204ENST00000539244 RPL30P62888 115 aaKnown RBP10.15□□□□□ -0.78
SS18-204ENST00000539244 EIF4EBP1Q13541 118 aaPredicted RBP10.15□□□□□ -0.78
SS18-204ENST00000539244 ARFRP1Q13795 201 aa10.15□□□□□ -0.78
SS18-204ENST00000539244 ANKRD55Q3KP44 614 aa10.15□□□□□ -0.78
SS18-204ENST00000539244 ZNF57Q68EA5 555 aaPredicted RBP10.15□□□□□ -0.78
SS18-204ENST00000539244 WFDC3Q8IUB2 231 aa10.15□□□□□ -0.78
SS18-204ENST00000539244 TMEM167AQ8TBQ9 72 aa10.15□□□□□ -0.78
SS18-204ENST00000539244 CACNG8Q8WXS5 425 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms