RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 RAB13P51153 203 aa5.48□□□□□ -1.53
USP28-206ENST00000538224 BRWD1-AS2P59051 145 aa5.48□□□□□ -1.53
USP28-206ENST00000538224 DLK1P80370 383 aa5.48□□□□□ -1.53
USP28-206ENST00000538224 MRPS11P82912 194 aaKnown RBP5.48□□□□□ -1.53
USP28-206ENST00000538224 TLE1Q04724 770 aa5.48□□□□□ -1.53
USP28-206ENST00000538224 EFNB3Q15768 340 aa5.48□□□□□ -1.53
USP28-206ENST00000538224 HAGHQ16775 308 aa5.48□□□□□ -1.53
USP28-206ENST00000538224 TMEM249Q2WGJ8 235 aa5.48□□□□□ -1.53
USP28-206ENST00000538224 ACOT6Q3I5F7 207 aaPredicted RBP5.48□□□□□ -1.53
USP28-206ENST00000538224 SLC25A48Q6ZT89 311 aaKnown RBP5.48□□□□□ -1.53
USP28-206ENST00000538224 ZNF439Q8NDP4 499 aa5.48□□□□□ -1.53
USP28-206ENST00000538224 RXFP4Q8TDU9 374 aa5.48□□□□□ -1.53
USP28-206ENST00000538224 SNRNP40Q96DI7 357 aaKnown RBP5.48□□□□□ -1.53
USP28-206ENST00000538224 NEIL1Q96FI4 390 aaPredicted RBP5.48□□□□□ -1.53
USP28-206ENST00000538224 DCTN5Q9BTE1 182 aa5.48□□□□□ -1.53
USP28-206ENST00000538224 QTRT1Q9BXR0 403 aaKnown RBP5.48□□□□□ -1.53
USP28-206ENST00000538224 NPCDR1Q9BY65 106 aa5.48□□□□□ -1.53
USP28-206ENST00000538224 DYNLRB1Q9NP97 96 aa5.48□□□□□ -1.53
USP28-206ENST00000538224 HEYLQ9NQ87 328 aaPredicted RBP5.48□□□□□ -1.53
USP28-206ENST00000538224 BIN3Q9NQY0 253 aa5.48□□□□□ -1.53
USP28-206ENST00000538224 SLC39A9Q9NUM3 307 aa5.48□□□□□ -1.53
USP28-206ENST00000538224 TMEM140Q9NV12 185 aa5.48□□□□□ -1.53
USP28-206ENST00000538224 FKBP11Q9NYL4 201 aa5.48□□□□□ -1.53
USP28-206ENST00000538224 GNG13Q9P2W3 67 aa5.48□□□□□ -1.53
USP28-206ENST00000538224 SLC25A10Q9UBX3 287 aaPredicted RBP5.48□□□□□ -1.53
USP28-206ENST00000538224 PRNDQ9UKY0 176 aa5.48□□□□□ -1.53
USP28-206ENST00000538224 FOXA2Q9Y261 457 aaPredicted RBP5.48□□□□□ -1.53
USP28-206ENST00000538224 ZNF257Q9Y2Q1 563 aa5.48□□□□□ -1.53
USP28-206ENST00000538224 PPIAL4AQ9Y536 164 aa5.48□□□□□ -1.53
USP28-206ENST00000538224 AKAP13Q12802 2813 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 ZFHX2Q9C0A1 2572 aaPredicted RBP5.47□□□□□ -1.53
USP28-206ENST00000538224 SMCO3A2RU48 225 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 C15orf62A8K5M9 175 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 COLCA2A8K830 154 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 B9A039 149 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 TMEM250H0YL14 139 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 H3BQ15 152 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 TMEM178BH3BS89 294 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 TMPRSS2O15393 492 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 TGOLN2O43493 480 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 NDUFB3O43676 98 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 IFNA10P01566 189 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 IFNA4P05014 189 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 THBDP07204 575 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 CD3EP07766 207 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 OR9G9P0C7N8 305 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 NDUFB7P17568 137 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 MDKP21741 143 aaPredicted RBP5.47□□□□□ -1.53
USP28-206ENST00000538224 NFYBP25208 207 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 CD1BP29016 333 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 MAS1LP35410 378 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 PSMB3P49720 205 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 ELLP55199 621 aaPredicted RBP5.47□□□□□ -1.53
USP28-206ENST00000538224 CCL20P78556 96 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 HOXA4Q00056 320 aaPredicted RBP5.47□□□□□ -1.53
USP28-206ENST00000538224 RELBQ01201 579 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 RAB31Q13636 194 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 FBXL19-AS1Q494R0 122 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 AKIRIN2Q53H80 203 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 RPL39P5Q59GN2 51 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 SPRNQ5BIV9 151 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 LRRC10Q5BKY1 277 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 CT45A1Q5HYN5 189 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 FFAR4Q5NUL3 377 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 NCMAPQ5T1S8 102 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 LCN15Q6UWW0 184 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 HEPN1Q6WQI6 88 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 LYG1Q8N1E2 194 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 CYB561D1Q8N8Q1 229 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 DEFB108BQ8NET1 73 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 OR10G9Q8NGN4 311 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 OR10G7Q8NGN6 311 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 CT45A3Q8NHU0 189 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 RAB1CQ92928 201 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 LHX4Q969G2 390 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 ZDHHC16Q969W1 377 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 HIST1H2BAQ96A08 127 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 MALSU1Q96EH3 234 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 ZNF714Q96N38 554 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 CCL13Q99616 98 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 RARRES2Q99969 163 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 TXNDC17Q9BRA2 123 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 TMEM14BQ9NUH8 114 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 KAAG1Q9UBP8 84 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 TCF19Q9Y242 345 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 WDR83OSQ9Y284 106 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 PUS1Q9Y606 427 aaKnown RBP eCLIP5.47□□□□□ -1.53
USP28-206ENST00000538224 CEP250Q9BV73 2442 aa5.47□□□□□ -1.53
USP28-206ENST00000538224 PRR14LQ5THK1 2151 aa5.46□□□□□ -1.53
USP28-206ENST00000538224 TRBV23-1A0A0A0MS06 115 aa5.46□□□□□ -1.54
USP28-206ENST00000538224 TMEM238LA0A1B0GVL6 79 aa5.46□□□□□ -1.54
USP28-206ENST00000538224 A0A1W2PPH5 198 aa5.46□□□□□ -1.54
USP28-206ENST00000538224 MED19A0JLT2 244 aaPredicted RBP5.46□□□□□ -1.54
USP28-206ENST00000538224 ZFP92A6NM28 416 aa5.46□□□□□ -1.54
USP28-206ENST00000538224 SEC14L6B5MCN3 397 aa5.46□□□□□ -1.54
USP28-206ENST00000538224 SLC31A2O15432 143 aa5.46□□□□□ -1.54
USP28-206ENST00000538224 CLN5O75503 358 aa5.46□□□□□ -1.54
USP28-206ENST00000538224 OR2C1O95371 312 aa5.46□□□□□ -1.54
USP28-206ENST00000538224 FSTL3O95633 263 aa5.46□□□□□ -1.54
USP28-206ENST00000538224 SELLP14151 372 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms