RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 IGKV1D-8A0A087WSZ0 117 aa11.24□□□□□ -0.61
VPS28-215ENST00000531924 SHISA3A0PJX4 238 aa11.24□□□□□ -0.61
VPS28-215ENST00000531924 LINC00473A8K010 186 aa11.24□□□□□ -0.61
VPS28-215ENST00000531924 A8MZ25 164 aa11.24□□□□□ -0.61
VPS28-215ENST00000531924 AIREO43918 545 aa11.24□□□□□ -0.61
VPS28-215ENST00000531924 SCGNO76038 276 aa11.24□□□□□ -0.61
VPS28-215ENST00000531924 IFNA6P05013 189 aa11.24□□□□□ -0.61
VPS28-215ENST00000531924 SAA1P0DJI8 122 aaPredicted RBP11.24□□□□□ -0.61
VPS28-215ENST00000531924 NFYAP23511 347 aaPredicted RBP11.24□□□□□ -0.61
VPS28-215ENST00000531924 PSMB9P28065 219 aa11.24□□□□□ -0.61
VPS28-215ENST00000531924 GNG2P59768 71 aa11.24□□□□□ -0.61
VPS28-215ENST00000531924 EXOSC2Q13868 293 aaKnown RBP11.24□□□□□ -0.61
VPS28-215ENST00000531924 CDK10Q15131 360 aa11.24□□□□□ -0.61
VPS28-215ENST00000531924 OR2B11Q5JQS5 317 aa11.24□□□□□ -0.61
VPS28-215ENST00000531924 HACD4Q5VWC8 232 aa11.24□□□□□ -0.61
VPS28-215ENST00000531924 SLC25A42Q86VD7 318 aa11.24□□□□□ -0.61
VPS28-215ENST00000531924 SPATA25Q9BR10 227 aa11.24□□□□□ -0.61
VPS28-215ENST00000531924 DCSTAMPQ9H295 470 aa11.24□□□□□ -0.61
VPS28-215ENST00000531924 ZNF430Q9H8G1 570 aaPredicted RBP11.24□□□□□ -0.61
VPS28-215ENST00000531924 AKIP1Q9NQ31 210 aa11.24□□□□□ -0.61
VPS28-215ENST00000531924 C19orf73Q9NVV2 129 aa11.24□□□□□ -0.61
VPS28-215ENST00000531924 NOTOA8MTQ0 251 aa11.23□□□□□ -0.61
VPS28-215ENST00000531924 PRH1P02810 166 aa11.23□□□□□ -0.61
VPS28-215ENST00000531924 CSN3P07498 182 aa11.23□□□□□ -0.61
VPS28-215ENST00000531924 FAM209BQ5JX69 171 aa11.23□□□□□ -0.61
VPS28-215ENST00000531924 ZFAND6Q6FIF0 208 aa11.23□□□□□ -0.61
VPS28-215ENST00000531924 IL34Q6ZMJ4 242 aa11.23□□□□□ -0.61
VPS28-215ENST00000531924 NECAP1Q8NC96 275 aa11.23□□□□□ -0.61
VPS28-215ENST00000531924 DYNLRB2Q8TF09 96 aa11.23□□□□□ -0.61
VPS28-215ENST00000531924 TCTEX1D2Q8WW35 142 aa11.23□□□□□ -0.61
VPS28-215ENST00000531924 SIGLEC8Q9NYZ4 499 aa11.23□□□□□ -0.61
VPS28-215ENST00000531924 DAPK2Q9UIK4 370 aa11.23□□□□□ -0.61
VPS28-215ENST00000531924 ADAM30Q9UKF2 790 aa11.23□□□□□ -0.61
VPS28-215ENST00000531924 ELF5Q9UKW6 265 aaPredicted RBP11.23□□□□□ -0.61
VPS28-215ENST00000531924 RAB26Q9ULW5 256 aa11.23□□□□□ -0.61
VPS28-215ENST00000531924 RBMX2Q9Y388 322 aaKnown RBP11.23□□□□□ -0.61
VPS28-215ENST00000531924 MRPS14O60783 128 aaKnown RBP11.22□□□□□ -0.61
VPS28-215ENST00000531924 GABARAPL2P60520 117 aa11.22□□□□□ -0.61
VPS28-215ENST00000531924 CNIH2Q6PI25 160 aa11.22□□□□□ -0.61
VPS28-215ENST00000531924 OR4S2Q8NH73 311 aa11.22□□□□□ -0.61
VPS28-215ENST00000531924 VSTM2AQ8TAG5 236 aa11.22□□□□□ -0.61
VPS28-215ENST00000531924 NUDCD2Q8WVJ2 157 aa11.22□□□□□ -0.61
VPS28-215ENST00000531924 HSD17B10Q99714 261 aaKnown RBP11.22□□□□□ -0.61
VPS28-215ENST00000531924 OR51E2Q9H255 320 aa11.22□□□□□ -0.61
VPS28-215ENST00000531924 SSR3Q9UNL2 185 aa11.22□□□□□ -0.61
VPS28-215ENST00000531924 TMEM235A6NFC5 223 aa11.21□□□□□ -0.61
VPS28-215ENST00000531924 OR2J3O76001 311 aa11.21□□□□□ -0.61
VPS28-215ENST00000531924 TPPPO94811 219 aa11.21□□□□□ -0.61
VPS28-215ENST00000531924 HLA-DQB1P01920 261 aa11.21□□□□□ -0.61
VPS28-215ENST00000531924 ARPC4P59998 168 aa11.21□□□□□ -0.61
VPS28-215ENST00000531924 HAGHQ16775 308 aa11.21□□□□□ -0.61
VPS28-215ENST00000531924 MRGPRG-AS1Q2M3A8 158 aa11.21□□□□□ -0.61
VPS28-215ENST00000531924 C15orf32Q32M92 178 aa11.21□□□□□ -0.61
VPS28-215ENST00000531924 TPRA1Q86W33 373 aa11.21□□□□□ -0.61
VPS28-215ENST00000531924 NR2C2APQ86WQ0 139 aa11.21□□□□□ -0.61
VPS28-215ENST00000531924 VKORC1L1Q8N0U8 176 aa11.21□□□□□ -0.61
VPS28-215ENST00000531924 TTC9CQ8N5M4 171 aa11.21□□□□□ -0.61
VPS28-215ENST00000531924 OR2K2Q8NGT1 345 aa11.21□□□□□ -0.61
VPS28-215ENST00000531924 FCGR1BQ92637 280 aa11.21□□□□□ -0.61
VPS28-215ENST00000531924 KCTD12Q96CX2 325 aaKnown RBP11.21□□□□□ -0.61
VPS28-215ENST00000531924 FYTTD1Q96QD9 318 aaKnown RBP11.21□□□□□ -0.61
VPS28-215ENST00000531924 OR2A7Q96R45 310 aa11.21□□□□□ -0.61
VPS28-215ENST00000531924 Q9H521 79 aa11.21□□□□□ -0.61
VPS28-215ENST00000531924 TXNL4BQ9NX01 149 aaKnown RBP11.21□□□□□ -0.61
VPS28-215ENST00000531924 SLC2A8Q9NY64 477 aa11.21□□□□□ -0.61
VPS28-215ENST00000531924 ANXA10Q9UJ72 324 aa11.21□□□□□ -0.61
VPS28-215ENST00000531924 SPATA2Q9UM82 520 aa11.21□□□□□ -0.61
VPS28-215ENST00000531924 ZNF257Q9Y2Q1 563 aa11.21□□□□□ -0.61
VPS28-215ENST00000531924 RRP15Q9Y3B9 282 aaKnown RBP11.21□□□□□ -0.61
VPS28-215ENST00000531924 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.2□□□□□ -0.62
VPS28-215ENST00000531924 BMPR1BO00238 502 aa11.2□□□□□ -0.62
VPS28-215ENST00000531924 RBMXL2O75526 392 aaKnown RBP11.2□□□□□ -0.62
VPS28-215ENST00000531924 DHFRP00374 187 aa11.2□□□□□ -0.62
VPS28-215ENST00000531924 FGF9P31371 208 aaPredicted RBP11.2□□□□□ -0.62
VPS28-215ENST00000531924 RPL27AP46776 148 aaKnown RBP11.2□□□□□ -0.62
VPS28-215ENST00000531924 CD81P60033 236 aa11.2□□□□□ -0.62
VPS28-215ENST00000531924 C10orf55Q5SWW7 151 aa11.2□□□□□ -0.62
VPS28-215ENST00000531924 UBE2UQ5VVX9 321 aa11.2□□□□□ -0.62
VPS28-215ENST00000531924 TAS2R8Q9NYW2 309 aa11.2□□□□□ -0.62
VPS28-215ENST00000531924 FBXL7Q9UJT9 491 aa11.2□□□□□ -0.62
VPS28-215ENST00000531924 TRBV9A0A0B4J1U6 114 aa11.19□□□□□ -0.62
VPS28-215ENST00000531924 IZUMO1RA6ND01 250 aa11.19□□□□□ -0.62
VPS28-215ENST00000531924 HMX3A6NHT5 357 aa11.19□□□□□ -0.62
VPS28-215ENST00000531924 GGCTO75223 188 aaKnown RBP11.19□□□□□ -0.62
VPS28-215ENST00000531924 HRASP01112 189 aa11.19□□□□□ -0.62
VPS28-215ENST00000531924 RPL30P62888 115 aaKnown RBP11.19□□□□□ -0.62
VPS28-215ENST00000531924 ZNF45Q02386 682 aa11.19□□□□□ -0.62
VPS28-215ENST00000531924 GUCA2BQ16661 112 aa11.19□□□□□ -0.62
VPS28-215ENST00000531924 SPARTQ8N0X7 666 aa11.19□□□□□ -0.62
VPS28-215ENST00000531924 LGALS14Q8TCE9 139 aa11.19□□□□□ -0.62
VPS28-215ENST00000531924 AIFM2Q9BRQ8 373 aa11.19□□□□□ -0.62
VPS28-215ENST00000531924 DNAH7Q8WXX0 4024 aa11.18□□□□□ -0.62
VPS28-215ENST00000531924 IGKV1D-13A0A0B4J2D9 117 aa11.18□□□□□ -0.62
VPS28-215ENST00000531924 PPP5D1E7EU14 171 aa11.18□□□□□ -0.62
VPS28-215ENST00000531924 KBTBD11O94819 623 aa11.18□□□□□ -0.62
VPS28-215ENST00000531924 IGKV1-13P0DP09 117 aa11.18□□□□□ -0.62
VPS28-215ENST00000531924 DEFA4P12838 97 aa11.18□□□□□ -0.62
VPS28-215ENST00000531924 MAS1LP35410 378 aa11.18□□□□□ -0.62
VPS28-215ENST00000531924 KIR2DS2P43631 304 aa11.18□□□□□ -0.62
VPS28-215ENST00000531924 CD300EQ496F6 205 aaPredicted RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms