RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 GHSRQ92847 366 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 TCEAL3Q969E4 200 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 FAM3DQ96BQ1 224 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 GALNT14Q96FL9 552 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 VPS25Q9BRG1 176 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 C1orf50Q9BV19 199 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 CCDC32Q9BV29 185 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 SNRNP25Q9BV90 132 aaKnown RBP3.5□□□□□ -1.85
CD44-220ENST00000525688 ZNF226Q9NYT6 803 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 CLCF1Q9UBD9 225 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 GLS2Q9UI32 602 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 HEY1Q9Y5J3 304 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 ZZEF1O43149 2961 aa3.5□□□□□ -1.85
CD44-220ENST00000525688 WDFY3Q8IZQ1 3526 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 CEP295Q9C0D2 2601 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 K7N7A8 449 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 MYL12BO14950 172 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 ZNF354AO60765 605 aaPredicted RBP3.49□□□□□ -1.85
CD44-220ENST00000525688 PFDN1O60925 122 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 OR2A4O95047 310 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 GAS8-AS1O95177 125 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 IFNA10P01566 189 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 IGHG2P01859 326 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 IGHV4-34P06331 123 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 RBP1P09455 135 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 OR4A8P0C604 315 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 ZNF806P0C7X5 589 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 SMIM6P0DI80 62 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 NELFEP18615 380 aaKnown RBP3.49□□□□□ -1.85
CD44-220ENST00000525688 GATA2P23769 480 aaPredicted RBP3.49□□□□□ -1.85
CD44-220ENST00000525688 PRTN3P24158 256 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 AQP1P29972 269 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 DDTP30046 118 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 PRDX4Q13162 271 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 FZD2Q14332 565 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 EBPQ15125 230 aaKnown RBP3.49□□□□□ -1.85
CD44-220ENST00000525688 MPPED2Q15777 294 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 CST6Q15828 149 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 BATFQ16520 125 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 GSG1Q2KHT4 349 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 C1orf100Q5SVJ3 147 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 ATAD3CQ5T2N8 411 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 C1orf194Q5T5A4 169 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 KDM4DQ6B0I6 523 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 C22orf39Q6P5X5 142 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 UNQ9370/PRO34162Q6UXP9 181 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 TEX43Q6ZNM6 134 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 TMPPEQ6ZT21 453 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 ZCCHC24Q8N2G6 241 aaKnown RBP3.49□□□□□ -1.85
CD44-220ENST00000525688 GPR26Q8NDV2 337 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 OR51S1Q8NGJ8 323 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 OR1N2Q8NGR9 330 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 OR9G1Q8NH87 305 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 ZNF420Q8TAQ5 688 aaPredicted RBP3.49□□□□□ -1.85
CD44-220ENST00000525688 TM4SF18Q96CE8 201 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 OR2A7Q96R45 310 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 OR4K3Q96R72 315 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 OR52B2Q96RD2 323 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 TCEAL7Q9BRU2 100 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 EFCAB11Q9BUY7 163 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 GGACTQ9BVM4 153 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 ULBP3Q9BZM4 244 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 SH3BGRL3Q9H299 93 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 PDFQ9HBH1 243 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 UBQLN4Q9NRR5 601 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 C14orf105Q9NVL8 296 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 FBXL12Q9NXK8 326 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 COPZ2Q9P299 210 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 DPM3Q9P2X0 92 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 PCYOX1Q9UHG3 505 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 PRNDQ9UKY0 176 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 BTRCQ9Y297 605 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 ASPMQ8IZT6 3477 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 CACNA1EQ15878 2313 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 TNRC6BQ9UPQ9 1833 aaKnown RBP3.49□□□□□ -1.85
CD44-220ENST00000525688 THADAQ6YHU6 1953 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 NUMA1Q14980 2115 aa3.49□□□□□ -1.85
CD44-220ENST00000525688 NCOR2Q9Y618 2525 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 CACNA1BQ00975 2339 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 KNL1Q8NG31 2342 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 NUP205Q92621 2012 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 DMXL2Q8TDJ6 3036 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 CFAP47Q6ZTR5 3102 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 IGHV1OR15-1A0A075B7D0 117 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 IGHV3-35A0A0C4DH35 117 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 FAM236DA0A1B0GTK5 79 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 A0A1B0GV50 99 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 hADV38S2A0JD32 116 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 GMNCA6NCL1 334 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 E7EQ34 232 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 TRAPPC2LH3BP13 241 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 TXNDC9O14530 226 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 CYB5BO43169 146 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 BCL2L11O43521 198 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 MMP23AO75900 390 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 FAM236CP0DP71 79 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 PGAM2P15259 253 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 RAB3BP20337 219 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 GLRXP35754 106 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 MAP2K4P45985 399 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms