RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 SPIN2AQ99865 258 aa13.4□□□□□ -0.26
DDX41-217ENST00000515562 SPIN2BQ9BPZ2 258 aa13.4□□□□□ -0.26
DDX41-217ENST00000515562 ZNF430Q9H8G1 570 aaPredicted RBP13.4□□□□□ -0.26
DDX41-217ENST00000515562 PEF1Q9UBV8 284 aaKnown RBP13.4□□□□□ -0.26
DDX41-217ENST00000515562 A0A0A6YYH2 397 aa13.39□□□□□ -0.27
DDX41-217ENST00000515562 A6NJ64 397 aa13.39□□□□□ -0.27
DDX41-217ENST00000515562 FAM223BA6NKX1 122 aa13.39□□□□□ -0.27
DDX41-217ENST00000515562 SSX5O60225 188 aa13.39□□□□□ -0.27
DDX41-217ENST00000515562 TUSC2O75896 110 aa13.39□□□□□ -0.27
DDX41-217ENST00000515562 FRMD6-AS1P0C7T7 363 aa13.39□□□□□ -0.27
DDX41-217ENST00000515562 APELAP0DMC3 54 aa13.39□□□□□ -0.27
DDX41-217ENST00000515562 DEFA5Q01523 94 aa13.39□□□□□ -0.27
DDX41-217ENST00000515562 MXD1Q05195 221 aa13.39□□□□□ -0.27
DDX41-217ENST00000515562 KLF5Q13887 457 aaPredicted RBP13.39□□□□□ -0.27
DDX41-217ENST00000515562 FAM223AQ8IWN6 122 aa13.39□□□□□ -0.27
DDX41-217ENST00000515562 OR9G4Q8NGQ1 327 aa13.39□□□□□ -0.27
DDX41-217ENST00000515562 VSTM2AQ8TAG5 236 aa13.39□□□□□ -0.27
DDX41-217ENST00000515562 IGKV1D-13A0A0B4J2D9 117 aa13.38□□□□□ -0.27
DDX41-217ENST00000515562 LOC100506127A0A0U1RQW1 187 aa13.38□□□□□ -0.27
DDX41-217ENST00000515562 TRIM64CA6NLI5 447 aa13.38□□□□□ -0.27
DDX41-217ENST00000515562 IGLV2-14P01704 120 aa13.38□□□□□ -0.27
DDX41-217ENST00000515562 IGKV1-13P0DP09 117 aa13.38□□□□□ -0.27
DDX41-217ENST00000515562 SYNJ2BPP57105 145 aa13.38□□□□□ -0.27
DDX41-217ENST00000515562 ARPC4P59998 168 aa13.38□□□□□ -0.27
DDX41-217ENST00000515562 RPEL1Q2QD12 228 aa13.38□□□□□ -0.27
DDX41-217ENST00000515562 OR2B11Q5JQS5 317 aa13.38□□□□□ -0.27
DDX41-217ENST00000515562 HAPLN4Q86UW8 402 aa13.38□□□□□ -0.27
DDX41-217ENST00000515562 SBSPONQ8IVN8 264 aa13.38□□□□□ -0.27
DDX41-217ENST00000515562 TCTEX1D2Q8WW35 142 aa13.38□□□□□ -0.27
DDX41-217ENST00000515562 TMEM127O75204 238 aa13.37□□□□□ -0.27
DDX41-217ENST00000515562 OR2A4O95047 310 aa13.37□□□□□ -0.27
DDX41-217ENST00000515562 RPL30P62888 115 aaKnown RBP13.37□□□□□ -0.27
DDX41-217ENST00000515562 RHOGP84095 191 aa13.37□□□□□ -0.27
DDX41-217ENST00000515562 NEDD8Q15843 81 aa13.37□□□□□ -0.27
DDX41-217ENST00000515562 TATDN3Q17R31 274 aa13.37□□□□□ -0.27
DDX41-217ENST00000515562 KCTD21Q4G0X4 260 aa13.37□□□□□ -0.27
DDX41-217ENST00000515562 IDNKQ5T6J7 187 aa13.37□□□□□ -0.27
DDX41-217ENST00000515562 SLC25A42Q86VD7 318 aa13.37□□□□□ -0.27
DDX41-217ENST00000515562 BEST4Q8NFU0 473 aa13.37□□□□□ -0.27
DDX41-217ENST00000515562 SNAPC3Q92966 411 aa13.37□□□□□ -0.27
DDX41-217ENST00000515562 SLC25A38Q96DW6 304 aa13.37□□□□□ -0.27
DDX41-217ENST00000515562 TNCP24821 2201 aa13.36□□□□□ -0.27
DDX41-217ENST00000515562 TRAV18A0A075B6X5 111 aa13.36□□□□□ -0.27
DDX41-217ENST00000515562 H0Y980 276 aa13.36□□□□□ -0.27
DDX41-217ENST00000515562 KBTBD11O94819 623 aa13.36□□□□□ -0.27
DDX41-217ENST00000515562 TRBV12-3P01733 135 aa13.36□□□□□ -0.27
DDX41-217ENST00000515562 CLEC2LP0C7M8 214 aa13.36□□□□□ -0.27
DDX41-217ENST00000515562 EIF4EBP1Q13541 118 aaPredicted RBP13.36□□□□□ -0.27
DDX41-217ENST00000515562 MSMO1Q15800 293 aa13.36□□□□□ -0.27
DDX41-217ENST00000515562 FAM209BQ5JX69 171 aa13.36□□□□□ -0.27
DDX41-217ENST00000515562 ZNF66Q6ZN08 573 aa13.36□□□□□ -0.27
DDX41-217ENST00000515562 RCHY1Q96PM5 261 aa13.36□□□□□ -0.27
DDX41-217ENST00000515562 RNF167Q9H6Y7 350 aa13.36□□□□□ -0.27
DDX41-217ENST00000515562 SPATA2Q9UM82 520 aa13.36□□□□□ -0.27
DDX41-217ENST00000515562 STAB2Q8WWQ8 2551 aa13.36□□□□□ -0.27
DDX41-217ENST00000515562 TRBV9A0A0B4J1U6 114 aa13.35□□□□□ -0.27
DDX41-217ENST00000515562 RBMXL2O75526 392 aaKnown RBP13.35□□□□□ -0.27
DDX41-217ENST00000515562 KIR2DS2P43631 304 aa13.35□□□□□ -0.27
DDX41-217ENST00000515562 EXOSC2Q13868 293 aaKnown RBP13.35□□□□□ -0.27
DDX41-217ENST00000515562 TIMM50Q3ZCQ8 353 aa13.35□□□□□ -0.27
DDX41-217ENST00000515562 C10orf55Q5SWW7 151 aa13.35□□□□□ -0.27
DDX41-217ENST00000515562 HOGA1Q86XE5 327 aa13.35□□□□□ -0.27
DDX41-217ENST00000515562 SGPP2Q8IWX5 399 aa13.35□□□□□ -0.27
DDX41-217ENST00000515562 TTC9CQ8N5M4 171 aa13.35□□□□□ -0.27
DDX41-217ENST00000515562 NECAP1Q8NC96 275 aa13.35□□□□□ -0.27
DDX41-217ENST00000515562 OR5H6Q8NGV6 325 aa13.35□□□□□ -0.27
DDX41-217ENST00000515562 OR2A7Q96R45 310 aa13.35□□□□□ -0.27
DDX41-217ENST00000515562 ZMAT4Q9H898 229 aa13.35□□□□□ -0.27
DDX41-217ENST00000515562 AKIP1Q9NQ31 210 aa13.35□□□□□ -0.27
DDX41-217ENST00000515562 DIABLOQ9NR28 239 aa13.35□□□□□ -0.27
DDX41-217ENST00000515562 TAS2R8Q9NYW2 309 aa13.35□□□□□ -0.27
DDX41-217ENST00000515562 SIGLEC8Q9NYZ4 499 aa13.35□□□□□ -0.27
DDX41-217ENST00000515562 PEMTQ9UBM1 199 aa13.35□□□□□ -0.27
DDX41-217ENST00000515562 C3orf84H3BNL1 204 aa13.34□□□□□ -0.27
DDX41-217ENST00000515562 HRASP01112 189 aa13.34□□□□□ -0.27
DDX41-217ENST00000515562 IGHV4-30-4P0DP06 118 aa13.34□□□□□ -0.27
DDX41-217ENST00000515562 FCGR2CP31995 323 aa13.34□□□□□ -0.27
DDX41-217ENST00000515562 MAS1LP35410 378 aa13.34□□□□□ -0.27
DDX41-217ENST00000515562 ZNF45Q02386 682 aa13.34□□□□□ -0.27
DDX41-217ENST00000515562 ATP5G2Q06055 141 aa13.34□□□□□ -0.27
DDX41-217ENST00000515562 LCN12Q6JVE5 192 aa13.34□□□□□ -0.27
DDX41-217ENST00000515562 IL34Q6ZMJ4 242 aa13.34□□□□□ -0.27
DDX41-217ENST00000515562 CROCCP3Q8IVE0 287 aa13.34□□□□□ -0.27
DDX41-217ENST00000515562 VKORC1L1Q8N0U8 176 aa13.34□□□□□ -0.27
DDX41-217ENST00000515562 PUSL1Q8N0Z8 303 aaKnown RBP13.34□□□□□ -0.27
DDX41-217ENST00000515562 MFSD4AQ8N468 514 aa13.34□□□□□ -0.27
DDX41-217ENST00000515562 OR13F1Q8NGS4 319 aa13.34□□□□□ -0.27
DDX41-217ENST00000515562 TMEM167AQ8TBQ9 72 aa13.34□□□□□ -0.27
DDX41-217ENST00000515562 SECTM1Q8WVN6 248 aa13.34□□□□□ -0.27
DDX41-217ENST00000515562 ZNF257Q9Y2Q1 563 aa13.34□□□□□ -0.27
DDX41-217ENST00000515562 NBEAL2Q6ZNJ1 2754 aa13.34□□□□□ -0.27
DDX41-217ENST00000515562 A8MZ25 164 aa13.33□□□□□ -0.28
DDX41-217ENST00000515562 AIREO43918 545 aa13.33□□□□□ -0.28
DDX41-217ENST00000515562 PPYP01298 95 aa13.33□□□□□ -0.28
DDX41-217ENST00000515562 PRH1P02810 166 aa13.33□□□□□ -0.28
DDX41-217ENST00000515562 CBX5P45973 191 aa13.33□□□□□ -0.28
DDX41-217ENST00000515562 RPL27AP46776 148 aaKnown RBP13.33□□□□□ -0.28
DDX41-217ENST00000515562 Q8N1Y9 231 aa13.33□□□□□ -0.28
DDX41-217ENST00000515562 Q8N402 240 aa13.33□□□□□ -0.28
DDX41-217ENST00000515562 GVQW1Q8N7I0 195 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms