RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 SLC31A2O15432 143 aa8.16□□□□□ -1.1
CLIP1-204ENST00000501271 SPRY3O43610 288 aa8.16□□□□□ -1.1
CLIP1-204ENST00000501271 HPRT1P00492 218 aa8.16□□□□□ -1.1
CLIP1-204ENST00000501271 FABP1P07148 127 aa8.16□□□□□ -1.1
CLIP1-204ENST00000501271 CFHR2P36980 270 aa8.16□□□□□ -1.1
CLIP1-204ENST00000501271 CDX1P47902 265 aaPredicted RBP8.16□□□□□ -1.1
CLIP1-204ENST00000501271 FAM201AQ5SY85 155 aa8.16□□□□□ -1.1
CLIP1-204ENST00000501271 PRAMEF5Q5TYX0 476 aa8.16□□□□□ -1.1
CLIP1-204ENST00000501271 ZADH2Q8N4Q0 377 aa8.16□□□□□ -1.1
CLIP1-204ENST00000501271 ZNF709Q8N972 641 aa8.16□□□□□ -1.1
CLIP1-204ENST00000501271 PARLQ9H300 379 aa8.16□□□□□ -1.1
CLIP1-204ENST00000501271 TRAV3A0A0B4J244 114 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 LINC00587B1AMM8 73 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 F2RL2O00254 374 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 KLF3P57682 345 aaPredicted RBP8.15□□□□□ -1.1
CLIP1-204ENST00000501271 NKX6-1P78426 367 aaPredicted RBP8.15□□□□□ -1.1
CLIP1-204ENST00000501271 GCSAMLQ5JQS6 135 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 TIMM23BQ5SRD1 257 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 DUX4L9Q6RFH8 374 aaPredicted RBP8.15□□□□□ -1.1
CLIP1-204ENST00000501271 OR13D1Q8NGV5 346 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 OR4F5Q8NH21 305 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 ABHD5Q8WTS1 349 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 ITLN1Q8WWA0 313 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 LEAP2Q969E1 77 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 OR4F4Q96R69 305 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 MANBALQ9NQG1 85 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 WDR83OSQ9Y284 106 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 AKAP13Q12802 2813 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 C17orf112F2Z3M2 114 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 TMEM250H0YL14 139 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 PHOX2AO14813 284 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 LHBP01229 141 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 TRGC1P0CF51 173 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 CD1BP29016 333 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 RPL23P62829 140 aaKnown RBP8.15□□□□□ -1.1
CLIP1-204ENST00000501271 TMEM241Q24JQ0 296 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 GFI1BQ5VTD9 330 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 IGF2-ASQ6U949 168 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 C16orf82Q7Z2V1 217 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 PPP1R35Q8TAP8 253 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 FRZBQ92765 325 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 CTDSP1Q9GZU7 261 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 CALYQ9NYX4 217 aa8.15□□□□□ -1.1
CLIP1-204ENST00000501271 TRBV24-1A0A075B6N3 115 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 FAM90A9PA6NNJ1 464 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 RRHO14718 337 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 PAGE4O60829 102 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 CRYAAP02489 173 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 OPN1MWP04001 364 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 OPN1MW2P0DN77 364 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 OPN1MW3P0DN78 364 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 GLRXP35754 106 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 CDC34P49427 236 aaPredicted RBP8.14□□□□□ -1.11
CLIP1-204ENST00000501271 SPCS3P61009 180 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 RELBQ01201 579 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 C17orf58Q2M2W7 97 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 OR4A16Q8NH70 328 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 DIRC2Q96SL1 478 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 GGACTQ9BVM4 153 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 MIOXQ9UGB7 285 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 ZNF292O60281 2723 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 TRAV38-1A0A0B4J264 116 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 PRSS46E5RG02 174 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 RBFOX2O43251 390 aaKnown RBP eCLIP8.14□□□□□ -1.11
CLIP1-204ENST00000501271 IFNA10P01566 189 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 SOD3P08294 240 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 CGB3P0DN86 165 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 CGB7P0DN87 165 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 BMP5P22003 454 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 VDAC2P45880 294 aaPredicted RBP8.14□□□□□ -1.11
CLIP1-204ENST00000501271 RTP5Q14D33 572 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 BSXQ3C1V8 233 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 ACOT6Q3I5F7 207 aaPredicted RBP8.14□□□□□ -1.11
CLIP1-204ENST00000501271 C4orf17Q53FE4 359 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 C22orf34Q6ZV56 151 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 NECAP1Q8NC96 275 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 TMEM170AQ8WVE7 144 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 DDB2Q92466 427 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 OR51M1Q9H341 326 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 TMEM140Q9NV12 185 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 RP1L1Q8IWN7 2480 aaPredicted RBP8.14□□□□□ -1.11
CLIP1-204ENST00000501271 YLPM1P49750 1951 aaKnown RBP8.14□□□□□ -1.11
CLIP1-204ENST00000501271 ATMQ13315 3056 aa8.14□□□□□ -1.11
CLIP1-204ENST00000501271 CUL9Q8IWT3 2517 aa8.13□□□□□ -1.11
CLIP1-204ENST00000501271 IGLV3-9A0A075B6K5 115 aa8.13□□□□□ -1.11
CLIP1-204ENST00000501271 SMCO3A2RU48 225 aa8.13□□□□□ -1.11
CLIP1-204ENST00000501271 GFRA3O60609 400 aa8.13□□□□□ -1.11
CLIP1-204ENST00000501271 ERVK-16P61578 105 aa8.13□□□□□ -1.11
CLIP1-204ENST00000501271 PDZD11Q5EBL8 140 aa8.13□□□□□ -1.11
CLIP1-204ENST00000501271 PYY3Q5JQD4 70 aa8.13□□□□□ -1.11
CLIP1-204ENST00000501271 TREML4Q6UXN2 200 aa8.13□□□□□ -1.11
CLIP1-204ENST00000501271 FAM216AQ8WUB2 273 aa8.13□□□□□ -1.11
CLIP1-204ENST00000501271 S1PR3Q99500 378 aa8.13□□□□□ -1.11
CLIP1-204ENST00000501271 SAA2-SAA4A0A096LPE2 208 aa8.13□□□□□ -1.11
CLIP1-204ENST00000501271 SEC14L6B5MCN3 397 aa8.13□□□□□ -1.11
CLIP1-204ENST00000501271 K7EM74 188 aa8.13□□□□□ -1.11
CLIP1-204ENST00000501271 PFN1P07737 140 aaKnown RBP8.13□□□□□ -1.11
CLIP1-204ENST00000501271 SAA2P0DJI9 122 aaPredicted RBP8.13□□□□□ -1.11
CLIP1-204ENST00000501271 NPPCP23582 126 aa8.13□□□□□ -1.11
CLIP1-204ENST00000501271 PDLIM3Q53GG5 364 aaPredicted RBP8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms