RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 DTYMKP23919 212 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 DUSP1P28562 367 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 BRS3P32247 399 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 WNT5AP41221 380 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 ALDH3B1P43353 468 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 PPOXP50336 477 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 RAB7AP51149 207 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 RND2P52198 227 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 EFNA4P52798 201 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 UBE2G2P60604 165 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 RPS20P60866 119 aaKnown RBP4.09□□□□□ -1.75
CSMD3-208ENST00000497026 HIST1H3AP68431 136 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 PMS2P11Q13670 270 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 TAF9Q16594 264 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 CFAP161Q6P656 301 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 FBXW12Q6X9E4 464 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 ZNF101Q8IZC7 436 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 TMEM104Q8NE00 496 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 OR56B2PQ8NGI1 322 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 OR4K13Q8NH42 304 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 TSEN15Q8WW01 171 aaKnown RBP4.09□□□□□ -1.75
CSMD3-208ENST00000497026 ZNRF4Q8WWF5 429 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 FRZBQ92765 325 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 TNFRSF14Q92956 283 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 MRPL24Q96A35 216 aaKnown RBP4.09□□□□□ -1.75
CSMD3-208ENST00000497026 RBMXL1Q96E39 390 aaKnown RBP4.09□□□□□ -1.75
CSMD3-208ENST00000497026 SEH1LQ96EE3 360 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 NMNAT3Q96T66 252 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 GFI1Q99684 422 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 C20orf144Q9BQM9 153 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 MIEN1Q9BRT3 115 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 ALKBH7Q9BT30 221 aaPredicted RBP4.09□□□□□ -1.75
CSMD3-208ENST00000497026 HCAR1Q9BXC0 346 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 OR2H1Q9GZK4 316 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 OR2J1Q9GZK6 312 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 CST11Q9H112 138 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 ARV1Q9H2C2 271 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 SRD5A3Q9H8P0 318 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 LYRM2Q9NU23 88 aaPredicted RBP4.09□□□□□ -1.75
CSMD3-208ENST00000497026 TMEM242Q9NWH2 141 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 FKBP11Q9NYL4 201 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 KIAA1456Q9P272 454 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 CKLFQ9UBR5 152 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 FBXL17Q9UF56 701 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 NAGKQ9UJ70 344 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 FZR1Q9UM11 496 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 FN1P02751 2386 aaKnown RBP4.09□□□□□ -1.76
CSMD3-208ENST00000497026 ABCA2Q9BZC7 2435 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 TRBV5-5A0A0J9YX44 114 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 FAM230AA0A1W2PPH8 454 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 MSGN1A6NI15 193 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 CBY3A6NI87 242 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 NKX6-3A6NJ46 265 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 ZNF705FA8MVS1 300 aaPredicted RBP4.08□□□□□ -1.76
CSMD3-208ENST00000497026 SLC17A2O00624 439 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 PIN1P1O15428 100 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 SLC16A7O60669 478 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 CA11O75493 328 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 SFT2D2O95562 160 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 NGFP01138 241 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 LCATP04180 440 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 ZNF735P0CB33 412 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 ZNF705DP0CH99 300 aaPredicted RBP4.08□□□□□ -1.76
CSMD3-208ENST00000497026 ZNF705BP0CI00 300 aaPredicted RBP4.08□□□□□ -1.76
CSMD3-208ENST00000497026 IRF2P14316 349 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 AKR1C4P17516 323 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 ANOS1P23352 680 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 RPL12P30050 165 aaKnown RBP4.08□□□□□ -1.76
CSMD3-208ENST00000497026 FCGR2CP31995 323 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 APLNRP35414 380 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 MPV17P39210 176 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 P2RY1P47900 373 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 SOX2P48431 317 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 PRDX4Q13162 271 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 BATFQ16520 125 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 MEP1BQ16820 701 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 TBC1D28Q2M2D7 210 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 TMEM128Q5BJH2 165 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 GFI1BQ5VTD9 330 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 CCDC144NLQ6NUI1 221 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 C16orf54Q6UWD8 224 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 TRAPPC6BQ86SZ2 158 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 ZNF429Q86V71 674 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 ZNF676Q8N7Q3 588 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 RNF152Q8N8N0 203 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 CYB561A3Q8NBI2 242 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 NPEPL1Q8NDH3 523 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 OR4S1Q8NGB4 309 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 OR10G4Q8NGN3 311 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 MPLKIPQ8TAP9 179 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 C10orf105Q8TEF2 133 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 C11orf40Q8WZ69 217 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 TMEM106AQ96A25 262 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 OR5B12Q96R08 314 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 PDCD1LG2Q9BQ51 273 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 GINS3Q9BRX5 216 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 VAMP8Q9BV40 100 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 ELOVL1Q9BW60 279 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 TTTY10Q9BZA0 68 aa4.08□□□□□ -1.76
CSMD3-208ENST00000497026 ELL3Q9HB65 397 aaPredicted RBP4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms