RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 CD33P20138 364 aa12.87□□□□□ -0.35
SF3A1-209ENST00000496189 UCP3P55916 312 aa12.87□□□□□ -0.35
SF3A1-209ENST00000496189 CX3CL1P78423 397 aa12.87□□□□□ -0.35
SF3A1-209ENST00000496189 ECSCRQ19T08 205 aa12.87□□□□□ -0.35
SF3A1-209ENST00000496189 TMEM177Q53S58 311 aa12.87□□□□□ -0.35
SF3A1-209ENST00000496189 ZNF562Q6V9R5 426 aa12.87□□□□□ -0.35
SF3A1-209ENST00000496189 PPP1R27Q86WC6 154 aa12.87□□□□□ -0.35
SF3A1-209ENST00000496189 SLC38A6Q8IZM9 456 aa12.87□□□□□ -0.35
SF3A1-209ENST00000496189 KLHL30-AS1Q8NEE0 82 aa12.87□□□□□ -0.35
SF3A1-209ENST00000496189 OR4S2Q8NH73 311 aa12.87□□□□□ -0.35
SF3A1-209ENST00000496189 DDB2Q92466 427 aa12.87□□□□□ -0.35
SF3A1-209ENST00000496189 WSB1Q9Y6I7 421 aa12.87□□□□□ -0.35
SF3A1-209ENST00000496189 PKD1L1Q8TDX9 2849 aa12.86□□□□□ -0.35
SF3A1-209ENST00000496189 ANKRD20A5PA0PJZ0 165 aa12.86□□□□□ -0.35
SF3A1-209ENST00000496189 ADARB2-AS1A8MUL3 147 aa12.86□□□□□ -0.35
SF3A1-209ENST00000496189 GPR31O00270 319 aa12.86□□□□□ -0.35
SF3A1-209ENST00000496189 TNFSF12O43508 249 aa12.86□□□□□ -0.35
SF3A1-209ENST00000496189 CA2P00918 260 aa12.86□□□□□ -0.35
SF3A1-209ENST00000496189 IGHG4P01861 327 aa12.86□□□□□ -0.35
SF3A1-209ENST00000496189 GNRHRP30968 328 aa12.86□□□□□ -0.35
SF3A1-209ENST00000496189 FAUP35544 74 aaKnown RBP12.86□□□□□ -0.35
SF3A1-209ENST00000496189 ECI1P42126 302 aa12.86□□□□□ -0.35
SF3A1-209ENST00000496189 GNB1P62873 340 aa12.86□□□□□ -0.35
SF3A1-209ENST00000496189 CNPY1Q3B7I2 92 aa12.86□□□□□ -0.35
SF3A1-209ENST00000496189 ZNF818PQ6ZRF7 136 aa12.86□□□□□ -0.35
SF3A1-209ENST00000496189 LINC00299Q6ZSB3 139 aa12.86□□□□□ -0.35
SF3A1-209ENST00000496189 ZNF695Q8IW36 515 aa12.86□□□□□ -0.35
SF3A1-209ENST00000496189 GDPD1Q8N9F7 314 aa12.86□□□□□ -0.35
SF3A1-209ENST00000496189 TERB2Q8NHR7 220 aa12.86□□□□□ -0.35
SF3A1-209ENST00000496189 CD300LFQ8TDQ1 290 aa12.86□□□□□ -0.35
SF3A1-209ENST00000496189 PRRT1Q99946 306 aa12.86□□□□□ -0.35
SF3A1-209ENST00000496189 AIFM2Q9BRQ8 373 aa12.86□□□□□ -0.35
SF3A1-209ENST00000496189 FXYD6Q9H0Q3 95 aa12.86□□□□□ -0.35
SF3A1-209ENST00000496189 ACTL6BO94805 426 aa12.85□□□□□ -0.35
SF3A1-209ENST00000496189 PGAM2P15259 253 aa12.85□□□□□ -0.35
SF3A1-209ENST00000496189 INPP1P49441 399 aa12.85□□□□□ -0.35
SF3A1-209ENST00000496189 RPL30P62888 115 aaKnown RBP12.85□□□□□ -0.35
SF3A1-209ENST00000496189 ZNF45Q02386 682 aa12.85□□□□□ -0.35
SF3A1-209ENST00000496189 EIF4EBP1Q13541 118 aaPredicted RBP12.85□□□□□ -0.35
SF3A1-209ENST00000496189 ZNF79Q15937 498 aa12.85□□□□□ -0.35
SF3A1-209ENST00000496189 SCGB2B2Q4G0G5 96 aa12.85□□□□□ -0.35
SF3A1-209ENST00000496189 AADACL3Q5VUY0 350 aa12.85□□□□□ -0.35
SF3A1-209ENST00000496189 TOMM5Q8N4H5 51 aa12.85□□□□□ -0.35
SF3A1-209ENST00000496189 ZFAND1Q8TCF1 268 aa12.85□□□□□ -0.35
SF3A1-209ENST00000496189 DEDD2Q8WXF8 326 aa12.85□□□□□ -0.35
SF3A1-209ENST00000496189 ARPC1AQ92747 370 aa12.85□□□□□ -0.35
SF3A1-209ENST00000496189 A0A1W2PN81 502 aa12.84□□□□□ -0.35
SF3A1-209ENST00000496189 G3V318 75 aa12.84□□□□□ -0.35
SF3A1-209ENST00000496189 RPLP1P05386 114 aaKnown RBP12.84□□□□□ -0.35
SF3A1-209ENST00000496189 CHRNA7P36544 502 aa12.84□□□□□ -0.35
SF3A1-209ENST00000496189 UBE2KP61086 200 aa12.84□□□□□ -0.35
SF3A1-209ENST00000496189 FXYD3Q14802 87 aa12.84□□□□□ -0.35
SF3A1-209ENST00000496189 OR2B11Q5JQS5 317 aa12.84□□□□□ -0.35
SF3A1-209ENST00000496189 UNQ5815/PRO19632Q6UWF5 114 aa12.84□□□□□ -0.35
SF3A1-209ENST00000496189 LHFPL1Q86WI0 220 aa12.84□□□□□ -0.35
SF3A1-209ENST00000496189 TEX45Q8NA69 505 aa12.84□□□□□ -0.35
SF3A1-209ENST00000496189 OR4D10Q8NGI6 311 aa12.84□□□□□ -0.35
SF3A1-209ENST00000496189 OR4C16Q8NGL9 310 aa12.84□□□□□ -0.35
SF3A1-209ENST00000496189 GRPEL2Q8TAA5 225 aa12.84□□□□□ -0.35
SF3A1-209ENST00000496189 VSTM2AQ8TAG5 236 aa12.84□□□□□ -0.35
SF3A1-209ENST00000496189 ZNF486Q96H40 463 aaPredicted RBP12.84□□□□□ -0.35
SF3A1-209ENST00000496189 RSRP1Q9BUV0 290 aa12.84□□□□□ -0.35
SF3A1-209ENST00000496189 MCUBQ9NWR8 336 aa12.84□□□□□ -0.35
SF3A1-209ENST00000496189 SCP2D1Q9UJQ7 156 aa12.84□□□□□ -0.35
SF3A1-209ENST00000496189 FOXA2Q9Y261 457 aaPredicted RBP12.84□□□□□ -0.35
SF3A1-209ENST00000496189 FCN1O00602 326 aa12.83□□□□□ -0.36
SF3A1-209ENST00000496189 RBFOX2O43251 390 aaKnown RBP eCLIP12.83□□□□□ -0.36
SF3A1-209ENST00000496189 PGLYRP1O75594 196 aaPredicted RBP12.83□□□□□ -0.36
SF3A1-209ENST00000496189 HRASP01112 189 aa12.83□□□□□ -0.36
SF3A1-209ENST00000496189 CDX1P47902 265 aaPredicted RBP12.83□□□□□ -0.36
SF3A1-209ENST00000496189 CRIP2P52943 208 aaPredicted RBP12.83□□□□□ -0.36
SF3A1-209ENST00000496189 CFHR3Q02985 330 aa12.83□□□□□ -0.36
SF3A1-209ENST00000496189 AKIRIN2Q53H80 203 aa12.83□□□□□ -0.36
SF3A1-209ENST00000496189 TRIQKQ629K1 86 aa12.83□□□□□ -0.36
SF3A1-209ENST00000496189 SPAG16Q8N0X2 631 aa12.83□□□□□ -0.36
SF3A1-209ENST00000496189 RNF152Q8N8N0 203 aa12.83□□□□□ -0.36
SF3A1-209ENST00000496189 OR5M8Q8NGP6 311 aa12.83□□□□□ -0.36
SF3A1-209ENST00000496189 OR51H1Q8NH63 302 aa12.83□□□□□ -0.36
SF3A1-209ENST00000496189 TMEM68Q96MH6 324 aa12.83□□□□□ -0.36
SF3A1-209ENST00000496189 SCGB3A2Q96PL1 93 aa12.83□□□□□ -0.36
SF3A1-209ENST00000496189 PHB2Q99623 299 aa12.83□□□□□ -0.36
SF3A1-209ENST00000496189 SRRQ9GZT4 340 aa12.83□□□□□ -0.36
SF3A1-209ENST00000496189 PTTG2Q9NZH5 202 aa12.83□□□□□ -0.36
SF3A1-209ENST00000496189 WNK1Q9H4A3 2382 aa12.83□□□□□ -0.36
SF3A1-209ENST00000496189 DUS4LO95620 317 aaKnown RBP12.82□□□□□ -0.36
SF3A1-209ENST00000496189 IGLV2-23P01705 113 aa12.82□□□□□ -0.36
SF3A1-209ENST00000496189 RLN1P04808 185 aa12.82□□□□□ -0.36
SF3A1-209ENST00000496189 PSMB8P28062 276 aa12.82□□□□□ -0.36
SF3A1-209ENST00000496189 PPIFP30405 207 aaKnown RBP12.82□□□□□ -0.36
SF3A1-209ENST00000496189 MYCNOSP40205 109 aa12.82□□□□□ -0.36
SF3A1-209ENST00000496189 PPP5CP53041 499 aa12.82□□□□□ -0.36
SF3A1-209ENST00000496189 PHLDA2Q53GA4 152 aa12.82□□□□□ -0.36
SF3A1-209ENST00000496189 ZNF57Q68EA5 555 aaPredicted RBP12.82□□□□□ -0.36
SF3A1-209ENST00000496189 C8orf86Q6ZUL3 223 aa12.82□□□□□ -0.36
SF3A1-209ENST00000496189 CCDC71LQ8N9Z2 235 aa12.82□□□□□ -0.36
SF3A1-209ENST00000496189 MINDY2Q8NBR6 621 aa12.82□□□□□ -0.36
SF3A1-209ENST00000496189 LFNGQ8NES3 379 aa12.82□□□□□ -0.36
SF3A1-209ENST00000496189 TRIM63Q969Q1 353 aa12.82□□□□□ -0.36
SF3A1-209ENST00000496189 GPHA2Q96T91 129 aa12.82□□□□□ -0.36
SF3A1-209ENST00000496189 GPR61Q9BZJ8 451 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms