RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 TSNAXQ99598 290 aaKnown RBP13.71□□□□□ -0.21
LIME1-208ENST00000493265 KIAA1456Q9P272 454 aa13.71□□□□□ -0.21
LIME1-208ENST00000493265 MOB4Q9Y3A3 225 aa13.71□□□□□ -0.21
LIME1-208ENST00000493265 SRRM4A7MD48 611 aaKnown RBP13.7□□□□□ -0.22
LIME1-208ENST00000493265 RBFOX2O43251 390 aaKnown RBP eCLIP13.7□□□□□ -0.22
LIME1-208ENST00000493265 SLC25A17O43808 307 aa13.7□□□□□ -0.22
LIME1-208ENST00000493265 HPRT1P00492 218 aa13.7□□□□□ -0.22
LIME1-208ENST00000493265 HLA-AP01891 365 aaKnown RBP13.7□□□□□ -0.22
LIME1-208ENST00000493265 OR4E1P0C645 316 aa13.7□□□□□ -0.22
LIME1-208ENST00000493265 ANXA3P12429 323 aa13.7□□□□□ -0.22
LIME1-208ENST00000493265 PSG5Q15238 335 aa13.7□□□□□ -0.22
LIME1-208ENST00000493265 TCTEX1D1Q8N7M0 179 aa13.7□□□□□ -0.22
LIME1-208ENST00000493265 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.7□□□□□ -0.22
LIME1-208ENST00000493265 OSR1Q8TAX0 266 aaPredicted RBP13.7□□□□□ -0.22
LIME1-208ENST00000493265 TAF15Q92804 592 aaKnown RBP eCLIP13.7□□□□□ -0.22
LIME1-208ENST00000493265 R3HDM4Q96D70 268 aa13.7□□□□□ -0.22
LIME1-208ENST00000493265 CLCC1Q96S66 551 aa13.7□□□□□ -0.22
LIME1-208ENST00000493265 TMEM222Q9H0R3 208 aa13.7□□□□□ -0.22
LIME1-208ENST00000493265 FBXL15Q9H469 300 aa13.7□□□□□ -0.22
LIME1-208ENST00000493265 METTL1Q9UBP6 276 aaKnown RBP13.7□□□□□ -0.22
LIME1-208ENST00000493265 FAM181BA6NEQ2 426 aa13.69□□□□□ -0.22
LIME1-208ENST00000493265 INMT-MINDY4F8WBC2 141 aa13.69□□□□□ -0.22
LIME1-208ENST00000493265 SFT2D2O95562 160 aa13.69□□□□□ -0.22
LIME1-208ENST00000493265 HRASP01112 189 aa13.69□□□□□ -0.22
LIME1-208ENST00000493265 KRASP01116 189 aa13.69□□□□□ -0.22
LIME1-208ENST00000493265 G6PCP35575 357 aa13.69□□□□□ -0.22
LIME1-208ENST00000493265 LGALS7P47929 136 aa13.69□□□□□ -0.22
LIME1-208ENST00000493265 DHODHQ02127 395 aa13.69□□□□□ -0.22
LIME1-208ENST00000493265 C9orf152Q5JTZ5 239 aa13.69□□□□□ -0.22
LIME1-208ENST00000493265 C12orf54Q6X4T0 127 aa13.69□□□□□ -0.22
LIME1-208ENST00000493265 LIAT1Q6ZQX7 453 aa13.69□□□□□ -0.22
LIME1-208ENST00000493265 DMBX1Q8NFW5 382 aa13.69□□□□□ -0.22
LIME1-208ENST00000493265 OR52B4Q8NGK2 314 aa13.69□□□□□ -0.22
LIME1-208ENST00000493265 GLYATL2Q8WU03 294 aa13.69□□□□□ -0.22
LIME1-208ENST00000493265 RASL11BQ9BPW5 248 aa13.69□□□□□ -0.22
LIME1-208ENST00000493265 SEC22CQ9BRL7 303 aa13.69□□□□□ -0.22
LIME1-208ENST00000493265 PLEKHA2Q9HB19 425 aa13.69□□□□□ -0.22
LIME1-208ENST00000493265 PLSCR3Q9NRY6 295 aa13.69□□□□□ -0.22
LIME1-208ENST00000493265 C1RLQ9NZP8 487 aa13.69□□□□□ -0.22
LIME1-208ENST00000493265 TENM1Q9UKZ4 2725 aa13.69□□□□□ -0.22
LIME1-208ENST00000493265 C9orf170A2RU37 121 aa13.68□□□□□ -0.22
LIME1-208ENST00000493265 CLDN34H7C241 214 aa13.68□□□□□ -0.22
LIME1-208ENST00000493265 RRHO14718 337 aa13.68□□□□□ -0.22
LIME1-208ENST00000493265 IGKV1-39P01597 117 aa13.68□□□□□ -0.22
LIME1-208ENST00000493265 IGLV2-23P01705 113 aa13.68□□□□□ -0.22
LIME1-208ENST00000493265 IGKV1D-39P04432 117 aa13.68□□□□□ -0.22
LIME1-208ENST00000493265 RNASE1P07998 156 aaKnown RBP13.68□□□□□ -0.22
LIME1-208ENST00000493265 UCP1P25874 307 aa13.68□□□□□ -0.22
LIME1-208ENST00000493265 UBE2MP61081 183 aaKnown RBP13.68□□□□□ -0.22
LIME1-208ENST00000493265 ERVK-16P61578 105 aa13.68□□□□□ -0.22
LIME1-208ENST00000493265 DHRS2Q13268 280 aa13.68□□□□□ -0.22
LIME1-208ENST00000493265 TMEM187Q14656 261 aa13.68□□□□□ -0.22
LIME1-208ENST00000493265 VMA21Q3ZAQ7 101 aa13.68□□□□□ -0.22
LIME1-208ENST00000493265 TMEM268Q5VZI3 342 aa13.68□□□□□ -0.22
LIME1-208ENST00000493265 LIN54Q6MZP7 749 aa13.68□□□□□ -0.22
LIME1-208ENST00000493265 ZNF695Q8IW36 515 aa13.68□□□□□ -0.22
LIME1-208ENST00000493265 OR8H1Q8NGG4 311 aa13.68□□□□□ -0.22
LIME1-208ENST00000493265 RNASE11Q8TAA1 199 aaKnown RBP13.68□□□□□ -0.22
LIME1-208ENST00000493265 GALNT14Q96FL9 552 aa13.68□□□□□ -0.22
LIME1-208ENST00000493265 RHOVQ96L33 236 aa13.68□□□□□ -0.22
LIME1-208ENST00000493265 RNF5Q99942 180 aa13.68□□□□□ -0.22
LIME1-208ENST00000493265 RAB18Q9NP72 206 aa13.68□□□□□ -0.22
LIME1-208ENST00000493265 TPSG1Q9NRR2 321 aa13.68□□□□□ -0.22
LIME1-208ENST00000493265 COMMD9Q9P000 198 aa13.68□□□□□ -0.22
LIME1-208ENST00000493265 TRIM77I1YAP6 450 aa13.67□□□□□ -0.22
LIME1-208ENST00000493265 B3GALNT1O75752 331 aa13.67□□□□□ -0.22
LIME1-208ENST00000493265 CRYBA1P05813 215 aa13.67□□□□□ -0.22
LIME1-208ENST00000493265 SAA1P0DJI8 122 aaPredicted RBP13.67□□□□□ -0.22
LIME1-208ENST00000493265 NQO2P16083 231 aa13.67□□□□□ -0.22
LIME1-208ENST00000493265 ANKRD55Q3KP44 614 aa13.67□□□□□ -0.22
LIME1-208ENST00000493265 C16orf82Q7Z2V1 217 aa13.67□□□□□ -0.22
LIME1-208ENST00000493265 LYG2Q86SG7 212 aa13.67□□□□□ -0.22
LIME1-208ENST00000493265 C5orf56Q8N8D9 126 aa13.67□□□□□ -0.22
LIME1-208ENST00000493265 Q8N9W7 124 aa13.67□□□□□ -0.22
LIME1-208ENST00000493265 NPBQ8NG41 125 aa13.67□□□□□ -0.22
LIME1-208ENST00000493265 LHFPL5Q8TAF8 219 aa13.67□□□□□ -0.22
LIME1-208ENST00000493265 MARCH11A6NNE9 402 aa13.66□□□□□ -0.22
LIME1-208ENST00000493265 WIPF1O43516 503 aa13.66□□□□□ -0.22
LIME1-208ENST00000493265 AKR1C2P52895 323 aa13.66□□□□□ -0.22
LIME1-208ENST00000493265 UBE2KP61086 200 aa13.66□□□□□ -0.22
LIME1-208ENST00000493265 GNB1P62873 340 aa13.66□□□□□ -0.22
LIME1-208ENST00000493265 BLCAPP62952 87 aa13.66□□□□□ -0.22
LIME1-208ENST00000493265 C5orf64Q2M2E5 130 aa13.66□□□□□ -0.22
LIME1-208ENST00000493265 ARSJQ5FYB0 599 aaPredicted RBP13.66□□□□□ -0.22
LIME1-208ENST00000493265 OR4A47Q6IF82 309 aa13.66□□□□□ -0.22
LIME1-208ENST00000493265 SELENOHQ8IZQ5 122 aaKnown RBP13.66□□□□□ -0.22
LIME1-208ENST00000493265 LGI3Q8N145 548 aa13.66□□□□□ -0.22
LIME1-208ENST00000493265 UXS1Q8NBZ7 420 aa13.66□□□□□ -0.22
LIME1-208ENST00000493265 MARVELD1Q9BSK0 173 aa13.66□□□□□ -0.22
LIME1-208ENST00000493265 FAM212BQ9NTI7 297 aaPredicted RBP13.66□□□□□ -0.22
LIME1-208ENST00000493265 TMEM140Q9NV12 185 aa13.66□□□□□ -0.22
LIME1-208ENST00000493265 M0QZK8 103 aa13.65□□□□□ -0.22
LIME1-208ENST00000493265 FCN1O00602 326 aa13.65□□□□□ -0.22
LIME1-208ENST00000493265 FGF16O43320 207 aa13.65□□□□□ -0.22
LIME1-208ENST00000493265 NDUFA3O95167 84 aa13.65□□□□□ -0.22
LIME1-208ENST00000493265 SPDEFO95238 335 aa13.65□□□□□ -0.22
LIME1-208ENST00000493265 CDS2O95674 445 aa13.65□□□□□ -0.22
LIME1-208ENST00000493265 DHFRP00374 187 aa13.65□□□□□ -0.22
LIME1-208ENST00000493265 AMY1AP04745 511 aa13.65□□□□□ -0.22
LIME1-208ENST00000493265 PJVKQ0ZLH3 352 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms