RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 TCF19Q9Y242 345 aa13.65□□□□□ -0.22
VIM-205ENST00000485947 DUXBA0A1W2PPF3 345 aa13.64□□□□□ -0.23
VIM-205ENST00000485947 DBX1A6NMT0 343 aa13.64□□□□□ -0.23
VIM-205ENST00000485947 PROP1O75360 226 aa13.64□□□□□ -0.23
VIM-205ENST00000485947 RPA2P15927 270 aa13.64□□□□□ -0.23
VIM-205ENST00000485947 HLA-GP17693 338 aa13.64□□□□□ -0.23
VIM-205ENST00000485947 HTR1DP28221 377 aa13.64□□□□□ -0.23
VIM-205ENST00000485947 FCN2Q15485 313 aa13.64□□□□□ -0.23
VIM-205ENST00000485947 SSX2Q16385 188 aa13.64□□□□□ -0.23
VIM-205ENST00000485947 ANKRD55Q3KP44 614 aa13.64□□□□□ -0.23
VIM-205ENST00000485947 RPL39P5Q59GN2 51 aa13.64□□□□□ -0.23
VIM-205ENST00000485947 LHFPL4Q7Z7J7 247 aa13.64□□□□□ -0.23
VIM-205ENST00000485947 CD300LFQ8TDQ1 290 aa13.64□□□□□ -0.23
VIM-205ENST00000485947 TCTEX1D2Q8WW35 142 aa13.64□□□□□ -0.23
VIM-205ENST00000485947 TMEM56Q96MV1 263 aa13.64□□□□□ -0.23
VIM-205ENST00000485947 MGAT4CQ9UBM8 478 aa13.64□□□□□ -0.23
VIM-205ENST00000485947 PRELID3BQ9Y3B1 194 aa13.64□□□□□ -0.23
VIM-205ENST00000485947 TMEM56-RWDD3S4R434 201 aa13.64□□□□□ -0.23
VIM-205ENST00000485947 TXNL1O43396 289 aa13.63□□□□□ -0.23
VIM-205ENST00000485947 PFDN1O60925 122 aa13.63□□□□□ -0.23
VIM-205ENST00000485947 TAGLNQ01995 201 aaKnown RBP13.63□□□□□ -0.23
VIM-205ENST00000485947 LY6EQ16553 131 aa13.63□□□□□ -0.23
VIM-205ENST00000485947 SP6Q3SY56 376 aa13.63□□□□□ -0.23
VIM-205ENST00000485947 AKAP14Q86UN6 197 aa13.63□□□□□ -0.23
VIM-205ENST00000485947 Q8N2B8 174 aa13.63□□□□□ -0.23
VIM-205ENST00000485947 UXS1Q8NBZ7 420 aa13.63□□□□□ -0.23
VIM-205ENST00000485947 ASB13Q8WXK3 278 aa13.63□□□□□ -0.23
VIM-205ENST00000485947 ST6GALNAC6Q969X2 333 aa13.63□□□□□ -0.23
VIM-205ENST00000485947 DPM3Q9P2X0 92 aa13.63□□□□□ -0.23
VIM-205ENST00000485947 A6NDX4 124 aa13.62□□□□□ -0.23
VIM-205ENST00000485947 LINC00473A8K010 186 aa13.62□□□□□ -0.23
VIM-205ENST00000485947 OOSP1A8MZH6 123 aa13.62□□□□□ -0.23
VIM-205ENST00000485947 BUB1B-PAK6H3BSN5 160 aa13.62□□□□□ -0.23
VIM-205ENST00000485947 RBFOX2O43251 390 aaKnown RBP eCLIP13.62□□□□□ -0.23
VIM-205ENST00000485947 CDS2O95674 445 aa13.62□□□□□ -0.23
VIM-205ENST00000485947 SERPINE2P07093 398 aa13.62□□□□□ -0.23
VIM-205ENST00000485947 BRS3P32247 399 aa13.62□□□□□ -0.23
VIM-205ENST00000485947 CEACAM3P40198 252 aa13.62□□□□□ -0.23
VIM-205ENST00000485947 RPL30P62888 115 aaKnown RBP13.62□□□□□ -0.23
VIM-205ENST00000485947 LIN54Q6MZP7 749 aa13.62□□□□□ -0.23
VIM-205ENST00000485947 C16orf82Q7Z2V1 217 aa13.62□□□□□ -0.23
VIM-205ENST00000485947 OR11H7Q8NGC8 314 aa13.62□□□□□ -0.23
VIM-205ENST00000485947 OR4P4Q8NGL7 312 aa13.62□□□□□ -0.23
VIM-205ENST00000485947 RBPMSQ93062 196 aaKnown RBP13.62□□□□□ -0.23
VIM-205ENST00000485947 GPHA2Q96T91 129 aa13.62□□□□□ -0.23
VIM-205ENST00000485947 LEUTXA8MZ59 168 aa13.61□□□□□ -0.23
VIM-205ENST00000485947 GOSR2O14653 212 aa13.61□□□□□ -0.23
VIM-205ENST00000485947 CCNKO75909 580 aa13.61□□□□□ -0.23
VIM-205ENST00000485947 ATG12O94817 140 aa13.61□□□□□ -0.23
VIM-205ENST00000485947 KRTAP10-3P60369 221 aa13.61□□□□□ -0.23
VIM-205ENST00000485947 SRSF4Q08170 494 aaKnown RBP13.61□□□□□ -0.23
VIM-205ENST00000485947 ZNF816Q0VGE8 651 aaPredicted RBP13.61□□□□□ -0.23
VIM-205ENST00000485947 C2orf68Q2NKX9 166 aa13.61□□□□□ -0.23
VIM-205ENST00000485947 ZNF695Q8IW36 515 aa13.61□□□□□ -0.23
VIM-205ENST00000485947 SPAG16Q8N0X2 631 aa13.61□□□□□ -0.23
VIM-205ENST00000485947 DYNAPQ8N1N2 210 aa13.61□□□□□ -0.23
VIM-205ENST00000485947 OR5M8Q8NGP6 311 aa13.61□□□□□ -0.23
VIM-205ENST00000485947 DDB2Q92466 427 aa13.61□□□□□ -0.23
VIM-205ENST00000485947 NEURL2Q9BR09 285 aa13.61□□□□□ -0.23
VIM-205ENST00000485947 PRKDCP78527 4128 aaKnown RBP13.61□□□□□ -0.23
VIM-205ENST00000485947 CHST1O43916 411 aa13.6□□□□□ -0.23
VIM-205ENST00000485947 IFNA21P01568 189 aa13.6□□□□□ -0.23
VIM-205ENST00000485947 GAPDHP04406 335 aaKnown RBP13.6□□□□□ -0.23
VIM-205ENST00000485947 RRASP10301 218 aa13.6□□□□□ -0.23
VIM-205ENST00000485947 ZNF585BQ52M93 769 aa13.6□□□□□ -0.23
VIM-205ENST00000485947 LDLRAD2Q5SZI1 272 aa13.6□□□□□ -0.23
VIM-205ENST00000485947 TMEM268Q5VZI3 342 aa13.6□□□□□ -0.23
VIM-205ENST00000485947 CCDC144NLQ6NUI1 221 aa13.6□□□□□ -0.23
VIM-205ENST00000485947 TGIF2LXQ8IUE1 241 aa13.6□□□□□ -0.23
VIM-205ENST00000485947 SELENOHQ8IZQ5 122 aaKnown RBP13.6□□□□□ -0.23
VIM-205ENST00000485947 PRSS22Q9GZN4 317 aa13.6□□□□□ -0.23
VIM-205ENST00000485947 PRR13Q9NZ81 148 aa13.6□□□□□ -0.23
VIM-205ENST00000485947 TMED3Q9Y3Q3 217 aa13.6□□□□□ -0.23
VIM-205ENST00000485947 NOTCH1P46531 2555 aa13.6□□□□□ -0.23
VIM-205ENST00000485947 LY6LH3BQJ8 138 aa13.59□□□□□ -0.23
VIM-205ENST00000485947 APOA2P02652 100 aa13.59□□□□□ -0.23
VIM-205ENST00000485947 GIPP09681 153 aaPredicted RBP13.59□□□□□ -0.23
VIM-205ENST00000485947 CT45A6P0DMU7 189 aa13.59□□□□□ -0.23
VIM-205ENST00000485947 CT45A5P0DMU8 189 aa13.59□□□□□ -0.23
VIM-205ENST00000485947 CT45A7P0DMV0 189 aa13.59□□□□□ -0.23
VIM-205ENST00000485947 CXCL3P19876 107 aa13.59□□□□□ -0.23
VIM-205ENST00000485947 GSG1LQ6UXU4 331 aa13.59□□□□□ -0.23
VIM-205ENST00000485947 SLC35G3Q8N808 338 aa13.59□□□□□ -0.23
VIM-205ENST00000485947 OR4S2Q8NH73 311 aa13.59□□□□□ -0.23
VIM-205ENST00000485947 LHFPL5Q8TAF8 219 aa13.59□□□□□ -0.23
VIM-205ENST00000485947 CFHR4Q92496 578 aa13.59□□□□□ -0.23
VIM-205ENST00000485947 RPEQ96AT9 228 aa13.59□□□□□ -0.23
VIM-205ENST00000485947 PPP1R14BQ96C90 147 aa13.59□□□□□ -0.23
VIM-205ENST00000485947 NABP2Q9BQ15 211 aa13.59□□□□□ -0.23
VIM-205ENST00000485947 MRPL20Q9BYC9 149 aaKnown RBP13.59□□□□□ -0.23
VIM-205ENST00000485947 ZNF436Q9C0F3 470 aaPredicted RBP13.59□□□□□ -0.23
VIM-205ENST00000485947 COMMD9Q9P000 198 aa13.59□□□□□ -0.23
VIM-205ENST00000485947 HILPDAQ9Y5L2 63 aa13.59□□□□□ -0.23
VIM-205ENST00000485947 FCGR3BO75015 233 aa13.58□□□□□ -0.24
VIM-205ENST00000485947 OR2A4O95047 310 aa13.58□□□□□ -0.24
VIM-205ENST00000485947 HPRT1P00492 218 aa13.58□□□□□ -0.24
VIM-205ENST00000485947 VDAC1P21796 283 aa13.58□□□□□ -0.24
VIM-205ENST00000485947 LPAR6P43657 344 aa13.58□□□□□ -0.24
VIM-205ENST00000485947 CD83Q01151 205 aa13.58□□□□□ -0.24
VIM-205ENST00000485947 RTL8BQ17RB0 113 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms