RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 TCRBP04435 133 aa13.13□□□□□ -0.31
TRIM54-203ENST00000485306 CD33P20138 364 aa13.13□□□□□ -0.31
TRIM54-203ENST00000485306 DUTP33316 252 aaKnown RBP13.13□□□□□ -0.31
TRIM54-203ENST00000485306 TAS2R31P59538 309 aa13.13□□□□□ -0.31
TRIM54-203ENST00000485306 TCTEX1D4Q5JR98 221 aa13.13□□□□□ -0.31
TRIM54-203ENST00000485306 KHDC1LQ5JSQ8 128 aa13.13□□□□□ -0.31
TRIM54-203ENST00000485306 FOXRED2Q8IWF2 684 aa13.13□□□□□ -0.31
TRIM54-203ENST00000485306 TCTEX1D1Q8N7M0 179 aa13.13□□□□□ -0.31
TRIM54-203ENST00000485306 NABP2Q9BQ15 211 aa13.13□□□□□ -0.31
TRIM54-203ENST00000485306 C5orf66Q9H5L9 145 aa13.13□□□□□ -0.31
TRIM54-203ENST00000485306 SLC2A9Q9NRM0 540 aa13.13□□□□□ -0.31
TRIM54-203ENST00000485306 NUBP2Q9Y5Y2 271 aa13.13□□□□□ -0.31
TRIM54-203ENST00000485306 PGLYRP1O75594 196 aaPredicted RBP13.12□□□□□ -0.31
TRIM54-203ENST00000485306 B3GALNT1O75752 331 aa13.12□□□□□ -0.31
TRIM54-203ENST00000485306 IGHG2P01859 326 aa13.12□□□□□ -0.31
TRIM54-203ENST00000485306 PF4P02776 101 aa13.12□□□□□ -0.31
TRIM54-203ENST00000485306 CT45A6P0DMU7 189 aa13.12□□□□□ -0.31
TRIM54-203ENST00000485306 CT45A5P0DMU8 189 aa13.12□□□□□ -0.31
TRIM54-203ENST00000485306 CT45A7P0DMV0 189 aa13.12□□□□□ -0.31
TRIM54-203ENST00000485306 RRASP10301 218 aa13.12□□□□□ -0.31
TRIM54-203ENST00000485306 MC5RP33032 325 aa13.12□□□□□ -0.31
TRIM54-203ENST00000485306 UBE2MP61081 183 aaKnown RBP13.12□□□□□ -0.31
TRIM54-203ENST00000485306 SLC35B1P78383 322 aa13.12□□□□□ -0.31
TRIM54-203ENST00000485306 EIF4EBP1Q13541 118 aaPredicted RBP13.12□□□□□ -0.31
TRIM54-203ENST00000485306 RGS21Q2M5E4 152 aa13.12□□□□□ -0.31
TRIM54-203ENST00000485306 KPRPQ5T749 579 aaPredicted RBP13.12□□□□□ -0.31
TRIM54-203ENST00000485306 KCTD9Q7L273 389 aa13.12□□□□□ -0.31
TRIM54-203ENST00000485306 SLC35E3Q7Z769 313 aa13.12□□□□□ -0.31
TRIM54-203ENST00000485306 Q8N6K4 173 aa13.12□□□□□ -0.31
TRIM54-203ENST00000485306 OR8H1Q8NGG4 311 aa13.12□□□□□ -0.31
TRIM54-203ENST00000485306 OR5AN1Q8NGI8 311 aa13.12□□□□□ -0.31
TRIM54-203ENST00000485306 C5orf30Q96GV9 206 aa13.12□□□□□ -0.31
TRIM54-203ENST00000485306 RTBDNQ9BSG5 229 aaPredicted RBP13.12□□□□□ -0.31
TRIM54-203ENST00000485306 VSIG4Q9Y279 399 aa13.12□□□□□ -0.31
TRIM54-203ENST00000485306 PRELID3BQ9Y3B1 194 aa13.12□□□□□ -0.31
TRIM54-203ENST00000485306 TGP01266 2768 aa13.12□□□□□ -0.31
TRIM54-203ENST00000485306 APOA2P02652 100 aa13.11□□□□□ -0.31
TRIM54-203ENST00000485306 KIR2DS2P43631 304 aa13.11□□□□□ -0.31
TRIM54-203ENST00000485306 PIGPP57054 158 aa13.11□□□□□ -0.31
TRIM54-203ENST00000485306 OXLD1Q5BKU9 147 aa13.11□□□□□ -0.31
TRIM54-203ENST00000485306 REC114Q7Z4M0 266 aa13.11□□□□□ -0.31
TRIM54-203ENST00000485306 NRARPQ7Z6K4 114 aa13.11□□□□□ -0.31
TRIM54-203ENST00000485306 CENPSQ8N2Z9 138 aa13.11□□□□□ -0.31
TRIM54-203ENST00000485306 COMMD1Q8N668 190 aa13.11□□□□□ -0.31
TRIM54-203ENST00000485306 WFDC9Q8NEX5 89 aa13.11□□□□□ -0.31
TRIM54-203ENST00000485306 CD300LFQ8TDQ1 290 aa13.11□□□□□ -0.31
TRIM54-203ENST00000485306 RASL11BQ9BPW5 248 aa13.11□□□□□ -0.31
TRIM54-203ENST00000485306 GON7Q9BXV9 100 aa13.11□□□□□ -0.31
TRIM54-203ENST00000485306 MRPL20Q9BYC9 149 aaKnown RBP13.11□□□□□ -0.31
TRIM54-203ENST00000485306 FAM212BQ9NTI7 297 aaPredicted RBP13.11□□□□□ -0.31
TRIM54-203ENST00000485306 LIN7CQ9NUP9 197 aaKnown RBP13.11□□□□□ -0.31
TRIM54-203ENST00000485306 NOTCH3Q9UM47 2321 aa13.11□□□□□ -0.31
TRIM54-203ENST00000485306 MPPED1O15442 326 aa13.1□□□□□ -0.31
TRIM54-203ENST00000485306 RBFOX2O43251 390 aaKnown RBP eCLIP13.1□□□□□ -0.31
TRIM54-203ENST00000485306 CBX3Q13185 183 aa13.1□□□□□ -0.31
TRIM54-203ENST00000485306 PHLDA2Q53GA4 152 aa13.1□□□□□ -0.31
TRIM54-203ENST00000485306 PLET1Q6UQ28 207 aa13.1□□□□□ -0.31
TRIM54-203ENST00000485306 C10orf99Q6UWK7 81 aa13.1□□□□□ -0.31
TRIM54-203ENST00000485306 ZNF329Q86UD4 541 aa13.1□□□□□ -0.31
TRIM54-203ENST00000485306 DDB2Q92466 427 aa13.1□□□□□ -0.31
TRIM54-203ENST00000485306 NOL4LQ96MY1 436 aaPredicted RBP13.1□□□□□ -0.31
TRIM54-203ENST00000485306 ALX4Q9H161 411 aaPredicted RBP13.1□□□□□ -0.31
TRIM54-203ENST00000485306 C20orf85Q9H1P6 137 aa13.1□□□□□ -0.31
TRIM54-203ENST00000485306 H0YJW9 148 aa13.09□□□□□ -0.31
TRIM54-203ENST00000485306 AP4M1O00189 453 aa13.09□□□□□ -0.31
TRIM54-203ENST00000485306 RLN1P04808 185 aa13.09□□□□□ -0.31
TRIM54-203ENST00000485306 PI3P19957 117 aa13.09□□□□□ -0.31
TRIM54-203ENST00000485306 F2RP25116 425 aa13.09□□□□□ -0.31
TRIM54-203ENST00000485306 MECP2P51608 486 aaKnown RBP13.09□□□□□ -0.31
TRIM54-203ENST00000485306 RTL8BQ17RB0 113 aa13.09□□□□□ -0.31
TRIM54-203ENST00000485306 TMEM128Q5BJH2 165 aa13.09□□□□□ -0.31
TRIM54-203ENST00000485306 TBC1D26Q86UD7 250 aa13.09□□□□□ -0.31
TRIM54-203ENST00000485306 SLC25A42Q86VD7 318 aa13.09□□□□□ -0.31
TRIM54-203ENST00000485306 PDPNQ86YL7 162 aa13.09□□□□□ -0.31
TRIM54-203ENST00000485306 SGPP2Q8IWX5 399 aa13.09□□□□□ -0.31
TRIM54-203ENST00000485306 ZNF383Q8NA42 475 aa13.09□□□□□ -0.31
TRIM54-203ENST00000485306 TCTEX1D2Q8WW35 142 aa13.09□□□□□ -0.31
TRIM54-203ENST00000485306 RNF5Q99942 180 aa13.09□□□□□ -0.31
TRIM54-203ENST00000485306 ZFP57Q9NU63 452 aa13.09□□□□□ -0.31
TRIM54-203ENST00000485306 KCNIP3Q9Y2W7 256 aa13.09□□□□□ -0.31
TRIM54-203ENST00000485306 WASHC3Q9Y3C0 194 aa13.09□□□□□ -0.31
TRIM54-203ENST00000485306 PIGBOS1A0A0B4J2F0 54 aa13.08□□□□□ -0.32
TRIM54-203ENST00000485306 TEX13DA0A0J9YY54 714 aaPredicted RBP13.08□□□□□ -0.32
TRIM54-203ENST00000485306 CRYM-AS1A6NIL9 109 aa13.08□□□□□ -0.32
TRIM54-203ENST00000485306 LINC00473A8K010 186 aa13.08□□□□□ -0.32
TRIM54-203ENST00000485306 ARPC1BO15143 372 aaKnown RBP13.08□□□□□ -0.32
TRIM54-203ENST00000485306 TNFSF12O43508 249 aa13.08□□□□□ -0.32
TRIM54-203ENST00000485306 H2AFB2P0C5Z0 115 aa13.08□□□□□ -0.32
TRIM54-203ENST00000485306 ANXA3P12429 323 aa13.08□□□□□ -0.32
TRIM54-203ENST00000485306 DHODHQ02127 395 aa13.08□□□□□ -0.32
TRIM54-203ENST00000485306 TMED4Q7Z7H5 227 aa13.08□□□□□ -0.32
TRIM54-203ENST00000485306 STPG2Q8N412 459 aa13.08□□□□□ -0.32
TRIM54-203ENST00000485306 Q8N9W7 124 aa13.08□□□□□ -0.32
TRIM54-203ENST00000485306 DRAXINQ8NBI3 349 aaPredicted RBP13.08□□□□□ -0.32
TRIM54-203ENST00000485306 MINDY2Q8NBR6 621 aa13.08□□□□□ -0.32
TRIM54-203ENST00000485306 RBMXL1Q96E39 390 aaKnown RBP13.08□□□□□ -0.32
TRIM54-203ENST00000485306 GALNT14Q96FL9 552 aa13.08□□□□□ -0.32
TRIM54-203ENST00000485306 NAA60Q9H7X0 242 aa13.08□□□□□ -0.32
TRIM54-203ENST00000485306 SLC35D1Q9NTN3 355 aa13.08□□□□□ -0.32
TRIM54-203ENST00000485306 NUDT15Q9NV35 164 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms