RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 BRD3OSQ6XYD6 125 aa6.63□□□□□ -1.35
SYNE1-225ENST00000481502 SETXQ7Z333 2677 aaKnown RBP6.63□□□□□ -1.35
SYNE1-225ENST00000481502 ZNF429Q86V71 674 aa6.63□□□□□ -1.35
SYNE1-225ENST00000481502 FOXRED2Q8IWF2 684 aa6.63□□□□□ -1.35
SYNE1-225ENST00000481502 PUSL1Q8N0Z8 303 aaKnown RBP6.63□□□□□ -1.35
SYNE1-225ENST00000481502 DRAXINQ8NBI3 349 aaPredicted RBP6.63□□□□□ -1.35
SYNE1-225ENST00000481502 EAF1Q96JC9 268 aaPredicted RBP6.63□□□□□ -1.35
SYNE1-225ENST00000481502 JMJD8Q96S16 334 aa6.63□□□□□ -1.35
SYNE1-225ENST00000481502 SSX3Q99909 188 aa6.63□□□□□ -1.35
SYNE1-225ENST00000481502 MED28Q9H204 178 aa6.63□□□□□ -1.35
SYNE1-225ENST00000481502 ZNF257Q9Y2Q1 563 aa6.63□□□□□ -1.35
SYNE1-225ENST00000481502 ALG5Q9Y673 324 aa6.63□□□□□ -1.35
SYNE1-225ENST00000481502 HMX3A6NHT5 357 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 FAM90A26D6RGX4 464 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 SSNA1O43805 119 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 RAMP3O60896 148 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 SNAPC5O75971 98 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 OR2A4O95047 310 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 CRYZL1O95825 349 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 IGKV1D-33P01593 117 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 IGKV1-33P01594 117 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 IGKV1-16P04430 117 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 SNRNP70P08621 437 aaKnown RBP6.62□□□□□ -1.35
SYNE1-225ENST00000481502 P0C879 139 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 SRD5A1P18405 259 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 REG1BP48304 166 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 RRAS2P62070 204 aaPredicted RBP6.62□□□□□ -1.35
SYNE1-225ENST00000481502 SLC9A3R2Q15599 337 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 ANKRD55Q3KP44 614 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 SP6Q3SY56 376 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 PDLIM3Q53GG5 364 aaPredicted RBP6.62□□□□□ -1.35
SYNE1-225ENST00000481502 NMSQ5H8A3 153 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 TMEM268Q5VZI3 342 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 RUSC1-AS1Q66K80 236 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 H2BFWTQ7Z2G1 175 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 PDZD9Q8IXQ8 264 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 MMD2Q8IY49 270 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 DYNAPQ8N1N2 210 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 OR52E5Q8NH55 327 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 TMEM167AQ8TBQ9 72 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 PIFOQ8TCI5 191 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 CASTOR1Q8WTX7 329 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 R3HDM4Q96D70 268 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 HARBI1Q96MB7 349 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 RBM14Q96PK6 669 aaKnown RBP6.62□□□□□ -1.35
SYNE1-225ENST00000481502 OR2A7Q96R45 310 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 SRSF8Q9BRL6 282 aaKnown RBP6.62□□□□□ -1.35
SYNE1-225ENST00000481502 SEC22CQ9BRL7 303 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.62□□□□□ -1.35
SYNE1-225ENST00000481502 KIAA1456Q9P272 454 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 ZNF580Q9UK33 172 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 PRNDQ9UKY0 176 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 TCF19Q9Y242 345 aa6.62□□□□□ -1.35
SYNE1-225ENST00000481502 ZNF469Q96JG9 3925 aaPredicted RBP6.61□□□□□ -1.35
SYNE1-225ENST00000481502 A0A0B4J293 547 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 A0A1W2PRD5 423 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 A0A1W2PRF3 423 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 A0A1W2PRM7 423 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 A6NDX4 124 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 RRHO14718 337 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 NBR2O15453 112 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 CRLF1O75462 422 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 KBTBD11O94819 623 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 S1PR2O95136 353 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 KRASP01116 189 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 IGKV1-39P01597 117 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 IGLV2-23P01705 113 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 IGKV1D-39P04432 117 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 CRYGBP07316 175 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 FAM157CP0CG43 387 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 SULT1A3P0DMM9 295 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 SULT1A4P0DMN0 295 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 TMEM11P17152 192 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 AKR1C2P52895 323 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 ATP5IP56385 69 aaPredicted RBP6.61□□□□□ -1.35
SYNE1-225ENST00000481502 DEFB112Q30KQ8 113 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 GGNBP1Q5YKI7 109 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 GSG1LQ6UXU4 331 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 HSD17B13Q7Z5P4 300 aaPredicted RBP6.61□□□□□ -1.35
SYNE1-225ENST00000481502 PPP1R27Q86WC6 154 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 MRPL41Q8IXM3 137 aaKnown RBP6.61□□□□□ -1.35
SYNE1-225ENST00000481502 SLC35G3Q8N808 338 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 DMBX1Q8NFW5 382 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 OR5M8Q8NGP6 311 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 OR5B3Q8NH48 314 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 LHFPL5Q8TAF8 219 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 ZNF418Q8TF45 676 aaPredicted RBP6.61□□□□□ -1.35
SYNE1-225ENST00000481502 TMEM68Q96MH6 324 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 NMES1Q9C002 83 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 BEX1Q9HBH7 125 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 F8P00451 2351 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 ZANQ9Y493 2812 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 HIVEP1P15822 2718 aa6.61□□□□□ -1.35
SYNE1-225ENST00000481502 SONP18583 2426 aaKnown RBP6.6□□□□□ -1.35
SYNE1-225ENST00000481502 SRRM4A7MD48 611 aaKnown RBP6.6□□□□□ -1.35
SYNE1-225ENST00000481502 INS-IGF2F8WCM5 200 aa6.6□□□□□ -1.35
SYNE1-225ENST00000481502 UPK2O00526 184 aa6.6□□□□□ -1.35
SYNE1-225ENST00000481502 PITX3O75364 302 aa6.6□□□□□ -1.35
SYNE1-225ENST00000481502 MED6O75586 246 aa6.6□□□□□ -1.35
SYNE1-225ENST00000481502 IGKV1-5P01602 117 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms