RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 HARBI1Q96MB7 349 aa5.68□□□□□ -1.5
USP54-211ENST00000474929 GPER1Q99527 375 aa5.68□□□□□ -1.5
USP54-211ENST00000474929 S100A13Q99584 98 aa5.68□□□□□ -1.5
USP54-211ENST00000474929 NIPSNAP3BQ9BS92 247 aa5.68□□□□□ -1.5
USP54-211ENST00000474929 PRRG3Q9BZD7 231 aa5.68□□□□□ -1.5
USP54-211ENST00000474929 ZNF436Q9C0F3 470 aaPredicted RBP5.68□□□□□ -1.5
USP54-211ENST00000474929 FAM192AQ9GZU8 254 aa5.68□□□□□ -1.5
USP54-211ENST00000474929 FNDC4Q9H6D8 234 aaPredicted RBP5.68□□□□□ -1.5
USP54-211ENST00000474929 S100A14Q9HCY8 104 aa5.68□□□□□ -1.5
USP54-211ENST00000474929 GHRLQ9UBU3 117 aa5.68□□□□□ -1.5
USP54-211ENST00000474929 FAT4Q6V0I7 4981 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 DPPA5A6NC42 116 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 CCDC182A6NF36 153 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 ZAR1LA6NP61 321 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 ANKRD65E5RJM6 399 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 ST8SIA5O15466 376 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 MAGEB4O15481 346 aaPredicted RBP5.67□□□□□ -1.5
USP54-211ENST00000474929 PRH1P02810 166 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 REG1AP05451 166 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 APELAP0DMC3 54 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 ALDH3B2P48448 385 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 IRF3Q14653 427 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 USF2Q15853 346 aaPredicted RBP5.67□□□□□ -1.5
USP54-211ENST00000474929 RPL39P5Q59GN2 51 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 NXNL2Q5VZ03 156 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 ZFP1Q6P2D0 407 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 TMEM88Q6PEY1 159 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 PLET1Q6UQ28 207 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 CBR4Q8N4T8 237 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 OR51A2Q8NGJ7 313 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 OR5D14Q8NGL3 314 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 OR13C3Q8NGS6 347 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 GIMAP1Q8WWP7 306 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 GABARAPL1Q9H0R8 117 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 METTL9Q9H1A3 318 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 SLC35D1Q9NTN3 355 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 ZNF221Q9UK13 617 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 ETV7Q9Y603 341 aa5.67□□□□□ -1.5
USP54-211ENST00000474929 TRAV2A0A0B4J234 112 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 METTL15A6NJ78 407 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 NPIPB5A8MRT5 1133 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 K7EMT4 169 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 EI24O14681 340 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 GEMIN2O14893 280 aaKnown RBP5.66□□□□□ -1.5
USP54-211ENST00000474929 GLAP06280 429 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 CRYGBP07316 175 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 GCSHP23434 173 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 ATP6V1E1P36543 226 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 GTF2A1P52655 376 aaPredicted RBP5.66□□□□□ -1.5
USP54-211ENST00000474929 NUTF2P61970 127 aaKnown RBP5.66□□□□□ -1.5
USP54-211ENST00000474929 EFNB1P98172 346 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 PJVKQ0ZLH3 352 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 ZNF124Q15973 351 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 AADACL4Q5VUY2 407 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 C12orf73Q69YU5 71 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 TEX45Q8NA69 505 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 ACOT12Q8WYK0 555 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 TBX5Q99593 518 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 SLC29A1Q99808 456 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 UQCC2Q9BRT2 126 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 BATF3Q9NR55 127 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 AASSQ9UDR5 926 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 ORC6Q9Y5N6 252 aa5.66□□□□□ -1.5
USP54-211ENST00000474929 SMIM9A6NGZ8 99 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 NDUFA4O00483 81 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 GABRPO00591 440 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 CYB5BO43169 146 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 SC5DO75845 299 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 IGLV2-23P01705 113 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 ALPLP05186 524 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 RRASP10301 218 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 GTF2F2P13984 249 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 HTN3P15516 51 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 RCC1P18754 421 aaPredicted RBP5.65□□□□□ -1.5
USP54-211ENST00000474929 FGF9P31371 208 aaPredicted RBP5.65□□□□□ -1.5
USP54-211ENST00000474929 KRTAP10-1P60331 282 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 TPBGQ13641 420 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 GPR176Q14439 515 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 PRSS8Q16651 343 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 RTL8BQ17RB0 113 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 TRPT1Q86TN4 253 aaKnown RBP5.65□□□□□ -1.5
USP54-211ENST00000474929 PQLC1Q8N2U9 271 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.65□□□□□ -1.5
USP54-211ENST00000474929 OR10K1Q8NGX5 313 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 NEU1Q99519 415 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 GABARAPL3Q9BY60 117 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 Q9H8V8 135 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 IMPAD1Q9NX62 359 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 THYN1Q9P016 225 aa5.65□□□□□ -1.5
USP54-211ENST00000474929 TRBV5-7A0A0A0MS05 114 aa5.64□□□□□ -1.51
USP54-211ENST00000474929 A0A0U1RQV1 116 aa5.64□□□□□ -1.51
USP54-211ENST00000474929 C15orf62A8K5M9 175 aa5.64□□□□□ -1.51
USP54-211ENST00000474929 IGHV3-23P01764 117 aa5.64□□□□□ -1.51
USP54-211ENST00000474929 CLEC3BP05452 202 aa5.64□□□□□ -1.51
USP54-211ENST00000474929 RAB3AP20336 220 aa5.64□□□□□ -1.51
USP54-211ENST00000474929 GPR183P32249 361 aa5.64□□□□□ -1.51
USP54-211ENST00000474929 TFPI2P48307 235 aa5.64□□□□□ -1.51
USP54-211ENST00000474929 UBE2KP61086 200 aa5.64□□□□□ -1.51
USP54-211ENST00000474929 CLINT1Q14677 625 aa5.64□□□□□ -1.51
USP54-211ENST00000474929 SPSB3Q6PJ21 355 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms