RNA–Protein interactions for RNA: ENST00000464425.1

VPS52-215, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 1,060 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-215ENST00000464425 PLGLAQ15195 96 aa13.41□□□□□ -0.26
VPS52-215ENST00000464425 LIN54Q6MZP7 749 aa13.41□□□□□ -0.26
VPS52-215ENST00000464425 IDO2Q6ZQW0 420 aa13.41□□□□□ -0.26
VPS52-215ENST00000464425 CENPXA8MT69 81 aa13.4□□□□□ -0.26
VPS52-215ENST00000464425 FCN1O00602 326 aa13.4□□□□□ -0.26
VPS52-215ENST00000464425 RRHO14718 337 aa13.4□□□□□ -0.26
VPS52-215ENST00000464425 PGLYRP1O75594 196 aaPredicted RBP13.4□□□□□ -0.26
VPS52-215ENST00000464425 NDUFA3O95167 84 aa13.4□□□□□ -0.26
VPS52-215ENST00000464425 HLA-DRB1P01911 266 aa13.4□□□□□ -0.26
VPS52-215ENST00000464425 OPN1MWP04001 364 aa13.4□□□□□ -0.26
VPS52-215ENST00000464425 OPN1MW2P0DN77 364 aa13.4□□□□□ -0.26
VPS52-215ENST00000464425 OPN1MW3P0DN78 364 aa13.4□□□□□ -0.26
VPS52-215ENST00000464425 RND3P61587 244 aa13.4□□□□□ -0.26
VPS52-215ENST00000464425 RPL30P62888 115 aaKnown RBP13.4□□□□□ -0.26
VPS52-215ENST00000464425 SLC35B1P78383 322 aa13.4□□□□□ -0.26
VPS52-215ENST00000464425 RTL8BQ17RB0 113 aa13.4□□□□□ -0.26
VPS52-215ENST00000464425 KCTD9Q7L273 389 aa13.4□□□□□ -0.26
VPS52-215ENST00000464425 OR13C8Q8NGS7 320 aa13.4□□□□□ -0.26
VPS52-215ENST00000464425 FLYWCH2Q96CP2 140 aaKnown RBP13.4□□□□□ -0.26
VPS52-215ENST00000464425 R3HDM4Q96D70 268 aa13.4□□□□□ -0.26
VPS52-215ENST00000464425 SCGB3A2Q96PL1 93 aa13.4□□□□□ -0.26
VPS52-215ENST00000464425 CLCC1Q96S66 551 aa13.4□□□□□ -0.26
VPS52-215ENST00000464425 TSSC4Q9Y5U2 329 aaPredicted RBP13.4□□□□□ -0.26
VPS52-215ENST00000464425 TNFSF12O43508 249 aa13.39□□□□□ -0.27
VPS52-215ENST00000464425 UPK1BO75841 260 aa13.39□□□□□ -0.27
VPS52-215ENST00000464425 PGAM2P15259 253 aa13.39□□□□□ -0.27
VPS52-215ENST00000464425 KIR2DS2P43631 304 aa13.39□□□□□ -0.27
VPS52-215ENST00000464425 CATR1Q13166 79 aa13.39□□□□□ -0.27
VPS52-215ENST00000464425 CBX3Q13185 183 aa13.39□□□□□ -0.27
VPS52-215ENST00000464425 PSG5Q15238 335 aa13.39□□□□□ -0.27
VPS52-215ENST00000464425 MARCH1Q8TCQ1 289 aa13.39□□□□□ -0.27
VPS52-215ENST00000464425 TCTEX1D2Q8WW35 142 aa13.39□□□□□ -0.27
VPS52-215ENST00000464425 TSNAXQ99598 290 aaKnown RBP13.39□□□□□ -0.27
VPS52-215ENST00000464425 SLC25A21Q9BQT8 299 aaPredicted RBP13.39□□□□□ -0.27
VPS52-215ENST00000464425 OR51J1Q9H342 316 aa13.39□□□□□ -0.27
VPS52-215ENST00000464425 PARP11Q9NR21 331 aa13.39□□□□□ -0.27
VPS52-215ENST00000464425 METTL1Q9UBP6 276 aaKnown RBP13.39□□□□□ -0.27
VPS52-215ENST00000464425 GPR132Q9UNW8 380 aa13.39□□□□□ -0.27
VPS52-215ENST00000464425 WSB1Q9Y6I7 421 aa13.39□□□□□ -0.27
VPS52-215ENST00000464425 IGHV7-81A0A0B4J1V7 117 aa13.38□□□□□ -0.27
VPS52-215ENST00000464425 PLA2G10O15496 165 aa13.38□□□□□ -0.27
VPS52-215ENST00000464425 RBFOX2O43251 390 aaKnown RBP eCLIP13.38□□□□□ -0.27
VPS52-215ENST00000464425 CTSDP07339 412 aaPredicted RBP13.38□□□□□ -0.27
VPS52-215ENST00000464425 VDAC1P21796 283 aa13.38□□□□□ -0.27
VPS52-215ENST00000464425 LGALS7P47929 136 aa13.38□□□□□ -0.27
VPS52-215ENST00000464425 BRWD1-AS2P59051 145 aa13.38□□□□□ -0.27
VPS52-215ENST00000464425 TMEM177Q53S58 311 aa13.38□□□□□ -0.27
VPS52-215ENST00000464425 TCTEX1D1Q8N7M0 179 aa13.38□□□□□ -0.27
VPS52-215ENST00000464425 OR4F17Q8NGA8 305 aa13.38□□□□□ -0.27
VPS52-215ENST00000464425 CD300LFQ8TDQ1 290 aa13.38□□□□□ -0.27
VPS52-215ENST00000464425 OR4F4Q96R69 305 aa13.38□□□□□ -0.27
VPS52-215ENST00000464425 GPHA2Q96T91 129 aa13.38□□□□□ -0.27
VPS52-215ENST00000464425 GON7Q9BXV9 100 aa13.38□□□□□ -0.27
VPS52-215ENST00000464425 SLC2A9Q9NRM0 540 aa13.38□□□□□ -0.27
VPS52-215ENST00000464425 FAM212BQ9NTI7 297 aaPredicted RBP13.38□□□□□ -0.27
VPS52-215ENST00000464425 PLXNB1O43157 2135 aa13.37□□□□□ -0.27
VPS52-215ENST00000464425 G3V318 75 aa13.37□□□□□ -0.27
VPS52-215ENST00000464425 ATP6V0E1O15342 81 aa13.37□□□□□ -0.27
VPS52-215ENST00000464425 SLC25A17O43808 307 aa13.37□□□□□ -0.27
VPS52-215ENST00000464425 IGF1P05019 195 aa13.37□□□□□ -0.27
VPS52-215ENST00000464425 F2RP25116 425 aa13.37□□□□□ -0.27
VPS52-215ENST00000464425 CX3CL1P78423 397 aa13.37□□□□□ -0.27
VPS52-215ENST00000464425 PHLDA2Q53GA4 152 aa13.37□□□□□ -0.27
VPS52-215ENST00000464425 TEX38Q6PEX7 206 aa13.37□□□□□ -0.27
VPS52-215ENST00000464425 LCNL1Q6ZST4 164 aa13.37□□□□□ -0.27
VPS52-215ENST00000464425 OSR1Q8TAX0 266 aaPredicted RBP13.37□□□□□ -0.27
VPS52-215ENST00000464425 RTBDNQ9BSG5 229 aaPredicted RBP13.37□□□□□ -0.27
VPS52-215ENST00000464425 C14orf166Q9Y224 244 aaKnown RBP13.37□□□□□ -0.27
VPS52-215ENST00000464425 LINC00854A0A1B0GVQ3 168 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 SHOXO15266 292 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 MPPED1O15442 326 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 LYRM1O43325 122 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 FCGR3BO75015 233 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 RLN1P04808 185 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 PF4V1P10720 104 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 PIGPP57054 158 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 NDPQ00604 133 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 OR2B11Q5JQS5 317 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 C18orf65Q6ZTR6 163 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 TBC1D26Q86UD7 250 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 SPAG16Q8N0X2 631 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 COMMD1Q8N668 190 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 CCDC71LQ8N9Z2 235 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 POC5Q8NA72 575 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 OR51H1Q8NH63 302 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 OR4S2Q8NH73 311 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 ABHD5Q8WTS1 349 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 HARBI1Q96MB7 349 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 C5orf66Q9H5L9 145 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 TPSG1Q9NRR2 321 aa13.36□□□□□ -0.27
VPS52-215ENST00000464425 SRRM4A7MD48 611 aaKnown RBP13.35□□□□□ -0.27
VPS52-215ENST00000464425 B3GALNT1O75752 331 aa13.35□□□□□ -0.27
VPS52-215ENST00000464425 SPDEFO95238 335 aa13.35□□□□□ -0.27
VPS52-215ENST00000464425 CRYZL1O95825 349 aa13.35□□□□□ -0.27
VPS52-215ENST00000464425 IGLV2-23P01705 113 aa13.35□□□□□ -0.27
VPS52-215ENST00000464425 RPLP1P05386 114 aaKnown RBP13.35□□□□□ -0.27
VPS52-215ENST00000464425 PI3P19957 117 aa13.35□□□□□ -0.27
VPS52-215ENST00000464425 BTCP35070 178 aa13.35□□□□□ -0.27
VPS52-215ENST00000464425 RPL23AP62750 156 aaKnown RBP13.35□□□□□ -0.27
VPS52-215ENST00000464425 CFHR3Q02985 330 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms