RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 KCTD21Q4G0X4 260 aa10.72□□□□□ -0.69
USP4-206ENST00000461553 OVCH2Q7RTZ1 564 aa10.72□□□□□ -0.69
USP4-206ENST00000461553 OR4S2Q8NH73 311 aa10.72□□□□□ -0.69
USP4-206ENST00000461553 TCTEX1D2Q8WW35 142 aa10.72□□□□□ -0.69
USP4-206ENST00000461553 SLC25A38Q96DW6 304 aa10.72□□□□□ -0.69
USP4-206ENST00000461553 HSD17B10Q99714 261 aaKnown RBP10.72□□□□□ -0.69
USP4-206ENST00000461553 ASCL2Q99929 193 aa10.72□□□□□ -0.69
USP4-206ENST00000461553 A0A0A6YYH2 397 aa10.71□□□□□ -0.69
USP4-206ENST00000461553 IGKV1D-13A0A0B4J2D9 117 aa10.71□□□□□ -0.69
USP4-206ENST00000461553 A6NJ64 397 aa10.71□□□□□ -0.69
USP4-206ENST00000461553 SSX5O60225 188 aa10.71□□□□□ -0.69
USP4-206ENST00000461553 CLEC2LP0C7M8 214 aa10.71□□□□□ -0.69
USP4-206ENST00000461553 IGKV1-13P0DP09 117 aa10.71□□□□□ -0.69
USP4-206ENST00000461553 TIMM50Q3ZCQ8 353 aa10.71□□□□□ -0.69
USP4-206ENST00000461553 ANKRD13BQ86YJ7 626 aa10.71□□□□□ -0.69
USP4-206ENST00000461553 MMD2Q8IY49 270 aa10.71□□□□□ -0.69
USP4-206ENST00000461553 ADAD2Q8NCV1 583 aaKnown RBP10.71□□□□□ -0.69
USP4-206ENST00000461553 BEST4Q8NFU0 473 aa10.71□□□□□ -0.69
USP4-206ENST00000461553 OR5H6Q8NGV6 325 aa10.71□□□□□ -0.69
USP4-206ENST00000461553 VSTM2AQ8TAG5 236 aa10.71□□□□□ -0.69
USP4-206ENST00000461553 USMG5Q96IX5 58 aa10.71□□□□□ -0.69
USP4-206ENST00000461553 RNF167Q9H6Y7 350 aa10.71□□□□□ -0.69
USP4-206ENST00000461553 ZNF430Q9H8G1 570 aaPredicted RBP10.71□□□□□ -0.69
USP4-206ENST00000461553 TRAV18A0A075B6X5 111 aa10.7□□□□□ -0.7
USP4-206ENST00000461553 MSGN1A6NI15 193 aa10.7□□□□□ -0.7
USP4-206ENST00000461553 FAM223BA6NKX1 122 aa10.7□□□□□ -0.7
USP4-206ENST00000461553 DYRK1AQ13627 763 aa10.7□□□□□ -0.7
USP4-206ENST00000461553 MRGPRG-AS1Q2M3A8 158 aa10.7□□□□□ -0.7
USP4-206ENST00000461553 RPEL1Q2QD12 228 aa10.7□□□□□ -0.7
USP4-206ENST00000461553 HAPLN4Q86UW8 402 aa10.7□□□□□ -0.7
USP4-206ENST00000461553 FAM223AQ8IWN6 122 aa10.7□□□□□ -0.7
USP4-206ENST00000461553 SPIN2AQ99865 258 aa10.7□□□□□ -0.7
USP4-206ENST00000461553 SPIN2BQ9BPZ2 258 aa10.7□□□□□ -0.7
USP4-206ENST00000461553 VCX3AQ9NNX9 186 aa10.7□□□□□ -0.7
USP4-206ENST00000461553 TAS2R8Q9NYW2 309 aa10.7□□□□□ -0.7
USP4-206ENST00000461553 PEF1Q9UBV8 284 aaKnown RBP10.7□□□□□ -0.7
USP4-206ENST00000461553 SPATA2Q9UM82 520 aa10.7□□□□□ -0.7
USP4-206ENST00000461553 NBEAL2Q6ZNJ1 2754 aa10.69□□□□□ -0.7
USP4-206ENST00000461553 TMEM127O75204 238 aa10.69□□□□□ -0.7
USP4-206ENST00000461553 KBTBD11O94819 623 aa10.69□□□□□ -0.7
USP4-206ENST00000461553 IGLV2-14P01704 120 aa10.69□□□□□ -0.7
USP4-206ENST00000461553 KIR2DS2P43631 304 aa10.69□□□□□ -0.7
USP4-206ENST00000461553 RPL30P62888 115 aaKnown RBP10.69□□□□□ -0.7
USP4-206ENST00000461553 EXOSC2Q13868 293 aaKnown RBP10.69□□□□□ -0.7
USP4-206ENST00000461553 C10orf55Q5SWW7 151 aa10.69□□□□□ -0.7
USP4-206ENST00000461553 ZNF343Q6P1L6 599 aa10.69□□□□□ -0.7
USP4-206ENST00000461553 OR9G4Q8NGQ1 327 aa10.69□□□□□ -0.7
USP4-206ENST00000461553 OR13F1Q8NGS4 319 aa10.69□□□□□ -0.7
USP4-206ENST00000461553 SECTM1Q8WVN6 248 aa10.69□□□□□ -0.7
USP4-206ENST00000461553 DIABLOQ9NR28 239 aa10.69□□□□□ -0.7
USP4-206ENST00000461553 TRIM64CA6NLI5 447 aa10.68□□□□□ -0.7
USP4-206ENST00000461553 OR2A4O95047 310 aa10.68□□□□□ -0.7
USP4-206ENST00000461553 IGLV1-51P01701 117 aa10.68□□□□□ -0.7
USP4-206ENST00000461553 TRBV12-3P01733 135 aa10.68□□□□□ -0.7
USP4-206ENST00000461553 SYNJ2BPP57105 145 aa10.68□□□□□ -0.7
USP4-206ENST00000461553 RHOGP84095 191 aa10.68□□□□□ -0.7
USP4-206ENST00000461553 MSMO1Q15800 293 aa10.68□□□□□ -0.7
USP4-206ENST00000461553 TATDN3Q17R31 274 aa10.68□□□□□ -0.7
USP4-206ENST00000461553 ZNF66Q6ZN08 573 aa10.68□□□□□ -0.7
USP4-206ENST00000461553 SLC25A42Q86VD7 318 aa10.68□□□□□ -0.7
USP4-206ENST00000461553 HOGA1Q86XE5 327 aa10.68□□□□□ -0.7
USP4-206ENST00000461553 CROCCP3Q8IVE0 287 aa10.68□□□□□ -0.7
USP4-206ENST00000461553 GVQW1Q8N7I0 195 aa10.68□□□□□ -0.7
USP4-206ENST00000461553 OR2A7Q96R45 310 aa10.68□□□□□ -0.7
USP4-206ENST00000461553 RYR3Q15413 4870 aa10.68□□□□□ -0.7
USP4-206ENST00000461553 DPPA5A6NC42 116 aa10.67□□□□□ -0.7
USP4-206ENST00000461553 HRASP01112 189 aa10.67□□□□□ -0.7
USP4-206ENST00000461553 PPYP01298 95 aa10.67□□□□□ -0.7
USP4-206ENST00000461553 PRH1P02810 166 aa10.67□□□□□ -0.7
USP4-206ENST00000461553 FRMD6-AS1P0C7T7 363 aa10.67□□□□□ -0.7
USP4-206ENST00000461553 FCGR2CP31995 323 aa10.67□□□□□ -0.7
USP4-206ENST00000461553 CBX5P45973 191 aa10.67□□□□□ -0.7
USP4-206ENST00000461553 CATR1Q13166 79 aa10.67□□□□□ -0.7
USP4-206ENST00000461553 EIF4EBP1Q13541 118 aaPredicted RBP10.67□□□□□ -0.7
USP4-206ENST00000461553 KLF5Q13887 457 aaPredicted RBP10.67□□□□□ -0.7
USP4-206ENST00000461553 SGPP2Q8IWX5 399 aa10.67□□□□□ -0.7
USP4-206ENST00000461553 VKORC1L1Q8N0U8 176 aa10.67□□□□□ -0.7
USP4-206ENST00000461553 MFSD4AQ8N468 514 aa10.67□□□□□ -0.7
USP4-206ENST00000461553 SNAPC3Q92966 411 aa10.67□□□□□ -0.7
USP4-206ENST00000461553 AUNIPQ9H7T9 357 aa10.67□□□□□ -0.7
USP4-206ENST00000461553 AKIP1Q9NQ31 210 aa10.67□□□□□ -0.7
USP4-206ENST00000461553 IFT46Q9NQC8 304 aa10.67□□□□□ -0.7
USP4-206ENST00000461553 PEMTQ9UBM1 199 aa10.67□□□□□ -0.7
USP4-206ENST00000461553 ZNF257Q9Y2Q1 563 aa10.67□□□□□ -0.7
USP4-206ENST00000461553 H0Y980 276 aa10.66□□□□□ -0.7
USP4-206ENST00000461553 TNFSF12O43508 249 aa10.66□□□□□ -0.7
USP4-206ENST00000461553 AIREO43918 545 aa10.66□□□□□ -0.7
USP4-206ENST00000461553 MAS1LP35410 378 aa10.66□□□□□ -0.7
USP4-206ENST00000461553 RPL27AP46776 148 aaKnown RBP10.66□□□□□ -0.7
USP4-206ENST00000461553 FXYD4P59646 89 aa10.66□□□□□ -0.7
USP4-206ENST00000461553 ATP5G2Q06055 141 aa10.66□□□□□ -0.7
USP4-206ENST00000461553 FAM209BQ5JX69 171 aa10.66□□□□□ -0.7
USP4-206ENST00000461553 UBE2NLQ5JXB2 153 aa10.66□□□□□ -0.7
USP4-206ENST00000461553 LCN12Q6JVE5 192 aa10.66□□□□□ -0.7
USP4-206ENST00000461553 PUSL1Q8N0Z8 303 aaKnown RBP10.66□□□□□ -0.7
USP4-206ENST00000461553 TTC9CQ8N5M4 171 aa10.66□□□□□ -0.7
USP4-206ENST00000461553 NECAP1Q8NC96 275 aa10.66□□□□□ -0.7
USP4-206ENST00000461553 ZBTB34Q8NCN2 500 aa10.66□□□□□ -0.7
USP4-206ENST00000461553 TMEM167AQ8TBQ9 72 aa10.66□□□□□ -0.7
USP4-206ENST00000461553 RCHY1Q96PM5 261 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms