RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 ISYNA1Q9NPH2 558 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 AK3Q9UIJ7 227 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 RNF150Q9ULK6 438 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 FOXA2Q9Y261 457 aaPredicted RBP5.59□□□□□ -1.51
USP54-208ENST00000461520 WASHC3Q9Y3C0 194 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 NUBP2Q9Y5Y2 271 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 U3KQK5 164 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 FOXI3A8MTJ6 420 aaPredicted RBP5.58□□□□□ -1.52
USP54-208ENST00000461520 LINC01619G3V211 115 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 H7C2Y5 167 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 SOCS1O15524 211 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 HSPA12AO43301 675 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 SOX15O60248 233 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 ARL6IP5O75915 188 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 LGALS1P09382 135 aaKnown RBP5.58□□□□□ -1.52
USP54-208ENST00000461520 PSMA1P25786 263 aaKnown RBP5.58□□□□□ -1.52
USP54-208ENST00000461520 CD40LGP29965 261 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 CEACAM6P40199 344 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 TMEM50BP56557 158 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 TPBGQ13641 420 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 IRF3Q14653 427 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 AKIRIN2Q53H80 203 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 LIPKQ5VXJ0 399 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 ZNF562Q6V9R5 426 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 GLDNQ6ZMI3 551 aaPredicted RBP5.58□□□□□ -1.52
USP54-208ENST00000461520 TMEM91Q6ZNR0 172 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 DCUN1D4Q92564 292 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 ABHD14BQ96IU4 210 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 OR5B12Q96R08 314 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 TOLLIPQ9H0E2 274 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 KCNK15Q9H427 330 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 DUSP21Q9H596 190 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 SLA2Q9H6Q3 261 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 PLGRKTQ9HBL7 147 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 Q9N2K0 584 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 C12orf4Q9NQ89 552 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 TPRKBQ9Y3C4 175 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 FBXO7Q9Y3I1 522 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 SMAD5-AS1Q9Y6J3 95 aa5.58□□□□□ -1.52
USP54-208ENST00000461520 HUWE1Q7Z6Z7 4374 aaKnown RBP5.57□□□□□ -1.52
USP54-208ENST00000461520 ERICH4A6NGS2 130 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 FCN1O00602 326 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 ARPC1BO15143 372 aaKnown RBP5.57□□□□□ -1.52
USP54-208ENST00000461520 SAP30O75446 220 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 TFAP2AP05549 437 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 SCTP09683 121 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 OR8U9P0C7N5 309 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 HSMCR30P0CW71 290 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 SERPINB10P48595 397 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 VEGFCP49767 419 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 PSMD7P51665 324 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 KRTAP10-6P60371 365 aaPredicted RBP5.57□□□□□ -1.52
USP54-208ENST00000461520 MLLT11Q13015 90 aaPredicted RBP5.57□□□□□ -1.52
USP54-208ENST00000461520 PSG5Q15238 335 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 P2RY14Q15391 338 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 ACTBL2Q562R1 376 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 UNQ5815/PRO19632Q6UWF5 114 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 PPP1R27Q86WC6 154 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 PDPNQ86YL7 162 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 OR56B1Q8NGI3 324 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 OR6Q1Q8NGQ2 317 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 DLX4Q92988 240 aaPredicted RBP5.57□□□□□ -1.52
USP54-208ENST00000461520 TMEM203Q969S6 136 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 FLYWCH2Q96CP2 140 aaKnown RBP5.57□□□□□ -1.52
USP54-208ENST00000461520 TSNAXQ99598 290 aaKnown RBP5.57□□□□□ -1.52
USP54-208ENST00000461520 GFI1Q99684 422 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 CMSS1Q9BQ75 279 aaKnown RBP5.57□□□□□ -1.52
USP54-208ENST00000461520 HDHD3Q9BSH5 251 aaPredicted RBP5.57□□□□□ -1.52
USP54-208ENST00000461520 PECRQ9BY49 303 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 PARP12Q9H0J9 701 aaKnown RBP5.57□□□□□ -1.52
USP54-208ENST00000461520 ALX4Q9H161 411 aaPredicted RBP5.57□□□□□ -1.52
USP54-208ENST00000461520 OR1A1Q9P1Q5 309 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 METTL1Q9UBP6 276 aaKnown RBP5.57□□□□□ -1.52
USP54-208ENST00000461520 ZNF221Q9UK13 617 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 AK6Q9Y3D8 172 aaKnown RBP5.57□□□□□ -1.52
USP54-208ENST00000461520 A3GALT2U3KPV4 340 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 DNAH7Q8WXX0 4024 aa5.57□□□□□ -1.52
USP54-208ENST00000461520 IGHV4OR15-8A0A075B7B6 117 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 A0A087WW49 117 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 IGKV1-6A0A0C4DH72 117 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 TRDCB7Z8K6 153 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 C3orf84H3BNL1 204 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 LDLRAD4O15165 306 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 DENRO43583 198 aaKnown RBP5.56□□□□□ -1.52
USP54-208ENST00000461520 DIRAS3O95661 229 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 CA2P00918 260 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 APOA2P02652 100 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 IGKV1-16P04430 117 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 HSPB1P04792 205 aaKnown RBP5.56□□□□□ -1.52
USP54-208ENST00000461520 CALRP27797 417 aaKnown RBP5.56□□□□□ -1.52
USP54-208ENST00000461520 AQP4P55087 323 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 KRTAP10-7P60409 375 aaPredicted RBP5.56□□□□□ -1.52
USP54-208ENST00000461520 RPS25P62851 125 aaKnown RBP5.56□□□□□ -1.52
USP54-208ENST00000461520 MRPS15P82914 257 aaKnown RBP5.56□□□□□ -1.52
USP54-208ENST00000461520 RAB11BQ15907 218 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 C2orf76Q3KRA6 126 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 PRSS48Q7RTY5 328 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 ZNF383Q8NA42 475 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 DRAXINQ8NBI3 349 aaPredicted RBP5.56□□□□□ -1.52
USP54-208ENST00000461520 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms