RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 HARBI1Q96MB7 349 aa10.16□□□□□ -0.78
SCLT1-202ENST00000439369 SEC22CQ9BRL7 303 aa10.16□□□□□ -0.78
SCLT1-202ENST00000439369 BEX1Q9HBH7 125 aa10.16□□□□□ -0.78
SCLT1-202ENST00000439369 SOX21Q9Y651 276 aaPredicted RBP10.16□□□□□ -0.78
SCLT1-202ENST00000439369 NAV3Q8IVL0 2385 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 A0A0B4J293 547 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 MDFIC2A0A1B0GVS7 189 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 MARCH11A6NNE9 402 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 OR2F2O95006 317 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 NDUFA3O95167 84 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 IGKV1-39P01597 117 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 IGKV1D-39P04432 117 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 VDAC1P21796 283 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 PAX6P26367 422 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 VMA21Q3ZAQ7 101 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 TMEM268Q5VZI3 342 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 Q6ZNX1 250 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 SELENOHQ8IZQ5 122 aaKnown RBP10.15□□□□□ -0.78
SCLT1-202ENST00000439369 C12orf45Q8N5I9 185 aaPredicted RBP10.15□□□□□ -0.78
SCLT1-202ENST00000439369 SIGLECL1Q8N7X8 197 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 TEX45Q8NA69 505 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 OR4A5Q8NH83 315 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 R3HDM4Q96D70 268 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 RRNAD1Q96FB5 475 aaKnown RBP10.15□□□□□ -0.78
SCLT1-202ENST00000439369 SEC22AQ96IW7 307 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 RBM14Q96PK6 669 aaKnown RBP10.15□□□□□ -0.78
SCLT1-202ENST00000439369 JMJD8Q96S16 334 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 RAB18Q9NP72 206 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 KIAA1456Q9P272 454 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 CACFD1Q9UGQ2 172 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 VPREB3Q9UKI3 123 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 TMED3Q9Y3Q3 217 aa10.15□□□□□ -0.78
SCLT1-202ENST00000439369 DBX1A6NMT0 343 aa10.14□□□□□ -0.79
SCLT1-202ENST00000439369 RRHO14718 337 aa10.14□□□□□ -0.79
SCLT1-202ENST00000439369 NBR2O15453 112 aa10.14□□□□□ -0.79
SCLT1-202ENST00000439369 FGF16O43320 207 aa10.14□□□□□ -0.79
SCLT1-202ENST00000439369 IGLV2-23P01705 113 aa10.14□□□□□ -0.79
SCLT1-202ENST00000439369 IGHV4-59P01825 116 aa10.14□□□□□ -0.79
SCLT1-202ENST00000439369 SLC25A6P12236 298 aa10.14□□□□□ -0.79
SCLT1-202ENST00000439369 HLA-GP17693 338 aa10.14□□□□□ -0.79
SCLT1-202ENST00000439369 PSG5Q15238 335 aa10.14□□□□□ -0.79
SCLT1-202ENST00000439369 MMDQ15546 238 aa10.14□□□□□ -0.79
SCLT1-202ENST00000439369 PUSL1Q8N0Z8 303 aaKnown RBP10.14□□□□□ -0.79
SCLT1-202ENST00000439369 OR52B4Q8NGK2 314 aa10.14□□□□□ -0.79
SCLT1-202ENST00000439369 LHFPL5Q8TAF8 219 aa10.14□□□□□ -0.79
SCLT1-202ENST00000439369 OR51J1Q9H342 316 aa10.14□□□□□ -0.79
SCLT1-202ENST00000439369 BET1LQ9NYM9 111 aa10.14□□□□□ -0.79
SCLT1-202ENST00000439369 MOB4Q9Y3A3 225 aa10.14□□□□□ -0.79
SCLT1-202ENST00000439369 MMP24Q9Y5R2 645 aa10.14□□□□□ -0.79
SCLT1-202ENST00000439369 ALG5Q9Y673 324 aa10.14□□□□□ -0.79
SCLT1-202ENST00000439369 VPS13CQ709C8 3753 aa10.14□□□□□ -0.79
SCLT1-202ENST00000439369 HOXA3O43365 443 aaPredicted RBP10.13□□□□□ -0.79
SCLT1-202ENST00000439369 KRASP01116 189 aa10.13□□□□□ -0.79
SCLT1-202ENST00000439369 IFNA21P01568 189 aa10.13□□□□□ -0.79
SCLT1-202ENST00000439369 IGKV1-5P01602 117 aa10.13□□□□□ -0.79
SCLT1-202ENST00000439369 CRYGBP07316 175 aa10.13□□□□□ -0.79
SCLT1-202ENST00000439369 IL6RP08887 468 aaPredicted RBP10.13□□□□□ -0.79
SCLT1-202ENST00000439369 P0C879 139 aa10.13□□□□□ -0.79
SCLT1-202ENST00000439369 CD24P25063 80 aa10.13□□□□□ -0.79
SCLT1-202ENST00000439369 AKR1C2P52895 323 aa10.13□□□□□ -0.79
SCLT1-202ENST00000439369 RPL15P61313 204 aaKnown RBP10.13□□□□□ -0.79
SCLT1-202ENST00000439369 Q71RC1 249 aaPredicted RBP10.13□□□□□ -0.79
SCLT1-202ENST00000439369 H2BFWTQ7Z2G1 175 aa10.13□□□□□ -0.79
SCLT1-202ENST00000439369 SLC35G3Q8N808 338 aa10.13□□□□□ -0.79
SCLT1-202ENST00000439369 DMBX1Q8NFW5 382 aa10.13□□□□□ -0.79
SCLT1-202ENST00000439369 SPIN2AQ99865 258 aa10.13□□□□□ -0.79
SCLT1-202ENST00000439369 SPIN2BQ9BPZ2 258 aa10.13□□□□□ -0.79
SCLT1-202ENST00000439369 SLC25A33Q9BSK2 321 aa10.13□□□□□ -0.79
SCLT1-202ENST00000439369 PLSCR3Q9NRY6 295 aa10.13□□□□□ -0.79
SCLT1-202ENST00000439369 COA4Q9NYJ1 87 aa10.13□□□□□ -0.79
SCLT1-202ENST00000439369 TLN2Q9Y4G6 2542 aa10.13□□□□□ -0.79
SCLT1-202ENST00000439369 F8P00451 2351 aa10.12□□□□□ -0.79
SCLT1-202ENST00000439369 SRRM4A7MD48 611 aaKnown RBP10.12□□□□□ -0.79
SCLT1-202ENST00000439369 SSNA1O43805 119 aa10.12□□□□□ -0.79
SCLT1-202ENST00000439369 OR2A4O95047 310 aa10.12□□□□□ -0.79
SCLT1-202ENST00000439369 SAA1P0DJI8 122 aaPredicted RBP10.12□□□□□ -0.79
SCLT1-202ENST00000439369 MAS1LP35410 378 aa10.12□□□□□ -0.79
SCLT1-202ENST00000439369 G6PCP35575 357 aa10.12□□□□□ -0.79
SCLT1-202ENST00000439369 HILS1P60008 231 aa10.12□□□□□ -0.79
SCLT1-202ENST00000439369 HNF4GQ14541 408 aa10.12□□□□□ -0.79
SCLT1-202ENST00000439369 C5orf64Q2M2E5 130 aa10.12□□□□□ -0.79
SCLT1-202ENST00000439369 NMSQ5H8A3 153 aa10.12□□□□□ -0.79
SCLT1-202ENST00000439369 OR4A47Q6IF82 309 aa10.12□□□□□ -0.79
SCLT1-202ENST00000439369 LYZL2Q7Z4W2 148 aa10.12□□□□□ -0.79
SCLT1-202ENST00000439369 FOXRED2Q8IWF2 684 aa10.12□□□□□ -0.79
SCLT1-202ENST00000439369 FAM71E2Q8N5Q1 922 aa10.12□□□□□ -0.79
SCLT1-202ENST00000439369 RNASE11Q8TAA1 199 aaKnown RBP10.12□□□□□ -0.79
SCLT1-202ENST00000439369 TMEM167AQ8TBQ9 72 aa10.12□□□□□ -0.79
SCLT1-202ENST00000439369 RITA1Q96K30 269 aa10.12□□□□□ -0.79
SCLT1-202ENST00000439369 OR2A7Q96R45 310 aa10.12□□□□□ -0.79
SCLT1-202ENST00000439369 TMEM140Q9NV12 185 aa10.12□□□□□ -0.79
SCLT1-202ENST00000439369 SIGLEC9Q9Y336 463 aa10.12□□□□□ -0.79
SCLT1-202ENST00000439369 CELSR1Q9NYQ6 3014 aa10.12□□□□□ -0.79
SCLT1-202ENST00000439369 A0A1B0GU03 582 aa10.11□□□□□ -0.79
SCLT1-202ENST00000439369 UPK2O00526 184 aa10.11□□□□□ -0.79
SCLT1-202ENST00000439369 SLC25A17O43808 307 aa10.11□□□□□ -0.79
SCLT1-202ENST00000439369 SNAPC5O75971 98 aa10.11□□□□□ -0.79
SCLT1-202ENST00000439369 KBTBD11O94819 623 aa10.11□□□□□ -0.79
SCLT1-202ENST00000439369 AARDQ4LEZ3 155 aa10.11□□□□□ -0.79
SCLT1-202ENST00000439369 LIN54Q6MZP7 749 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms