RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 GRPEL2Q8TAA5 225 aa8.97□□□□□ -0.97
COL28A1-203ENST00000435823 VSTM2AQ8TAG5 236 aa8.97□□□□□ -0.97
COL28A1-203ENST00000435823 FCAMRQ8WWV6 532 aa8.97□□□□□ -0.97
COL28A1-203ENST00000435823 DIRAS2Q96HU8 199 aa8.97□□□□□ -0.97
COL28A1-203ENST00000435823 FOXA2Q9Y261 457 aaPredicted RBP8.97□□□□□ -0.97
COL28A1-203ENST00000435823 FBXO7Q9Y3I1 522 aa8.97□□□□□ -0.97
COL28A1-203ENST00000435823 TRRAPQ9Y4A5 3859 aa8.97□□□□□ -0.97
COL28A1-203ENST00000435823 SRRM4A7MD48 611 aaKnown RBP8.96□□□□□ -0.98
COL28A1-203ENST00000435823 IFNA6P05013 189 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 SAA1P0DJI8 122 aaPredicted RBP8.96□□□□□ -0.98
COL28A1-203ENST00000435823 CD33P20138 364 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 PSMB8P28062 276 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 CDX1P47902 265 aaPredicted RBP8.96□□□□□ -0.98
COL28A1-203ENST00000435823 IL18Q14116 193 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 AKIRIN2Q53H80 203 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 VAX1Q5SQQ9 334 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 AADACL3Q5VUY0 350 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 PYHIN1Q6K0P9 492 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 LPCAT3Q6P1A2 487 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 ZNF818PQ6ZRF7 136 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 C8orf86Q6ZUL3 223 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 CMTM1Q8IZ96 169 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 SPAG16Q8N0X2 631 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 RNF152Q8N8N0 203 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 POC5Q8NA72 575 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 MINDY2Q8NBR6 621 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 LFNGQ8NES3 379 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 OR5M8Q8NGP6 311 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 MCFD2Q8NI22 146 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 ABHD1Q96SE0 405 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 AIFM2Q9BRQ8 373 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 FAM103A1Q9BTL3 118 aaKnown RBP8.96□□□□□ -0.98
COL28A1-203ENST00000435823 SLIRPQ9GZT3 109 aaKnown RBP8.96□□□□□ -0.98
COL28A1-203ENST00000435823 RSL24D1Q9UHA3 163 aaKnown RBP8.96□□□□□ -0.98
COL28A1-203ENST00000435823 NUBP2Q9Y5Y2 271 aa8.96□□□□□ -0.98
COL28A1-203ENST00000435823 GABARAPH6UMI1 98 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 GPR31O00270 319 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 RBFOX2O43251 390 aaKnown RBP eCLIP8.95□□□□□ -0.98
COL28A1-203ENST00000435823 ACTL6BO94805 426 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 HRASP01112 189 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 IGLV1-40P01703 118 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 TBPP20226 339 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 S100GP29377 79 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 GNRHRP30968 328 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 MYCNOSP40205 109 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 SSBP1Q04837 148 aaKnown RBP8.95□□□□□ -0.98
COL28A1-203ENST00000435823 PJVKQ0ZLH3 352 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 TNXAQ16473 311 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 PRSS8Q16651 343 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 RNASE10Q5GAN6 216 aaKnown RBP8.95□□□□□ -0.98
COL28A1-203ENST00000435823 IDO2Q6ZQW0 420 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 LCNL1Q6ZST4 164 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 OR51H1Q8NH63 302 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 CD300LFQ8TDQ1 290 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 TMEM68Q96MH6 324 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 GPHA2Q96T91 129 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 PHB2Q99623 299 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 FXYD6Q9H0Q3 95 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 KLK11Q9UBX7 282 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 MTFP1Q9UDX5 166 aa8.95□□□□□ -0.98
COL28A1-203ENST00000435823 M0QYG6 137 aa8.94□□□□□ -0.98
COL28A1-203ENST00000435823 ZNF701M0R085 212 aaPredicted RBP8.94□□□□□ -0.98
COL28A1-203ENST00000435823 ARPC1BO15143 372 aaKnown RBP8.94□□□□□ -0.98
COL28A1-203ENST00000435823 PLXNB1O43157 2135 aa8.94□□□□□ -0.98
COL28A1-203ENST00000435823 OR2A4O95047 310 aa8.94□□□□□ -0.98
COL28A1-203ENST00000435823 HPRT1P00492 218 aa8.94□□□□□ -0.98
COL28A1-203ENST00000435823 EGR2P11161 476 aaPredicted RBP8.94□□□□□ -0.98
COL28A1-203ENST00000435823 RAB9AP51151 201 aa8.94□□□□□ -0.98
COL28A1-203ENST00000435823 TAS2R19P59542 299 aa8.94□□□□□ -0.98
COL28A1-203ENST00000435823 C19orf54Q5BKX5 351 aa8.94□□□□□ -0.98
COL28A1-203ENST00000435823 C18orf65Q6ZTR6 163 aa8.94□□□□□ -0.98
COL28A1-203ENST00000435823 MMD2Q8IY49 270 aa8.94□□□□□ -0.98
COL28A1-203ENST00000435823 ARRDC1Q8N5I2 433 aa8.94□□□□□ -0.98
COL28A1-203ENST00000435823 TMEM229BQ8NBD8 167 aa8.94□□□□□ -0.98
COL28A1-203ENST00000435823 C4orf3Q8WVX3 66 aa8.94□□□□□ -0.98
COL28A1-203ENST00000435823 UBE2E2Q96LR5 201 aa8.94□□□□□ -0.98
COL28A1-203ENST00000435823 OR2A7Q96R45 310 aa8.94□□□□□ -0.98
COL28A1-203ENST00000435823 KLK15Q9H2R5 256 aa8.94□□□□□ -0.98
COL28A1-203ENST00000435823 VSIG4Q9Y279 399 aa8.94□□□□□ -0.98
COL28A1-203ENST00000435823 FABP12A6NFH5 140 aa8.93□□□□□ -0.98
COL28A1-203ENST00000435823 CTDSPLO15194 276 aa8.93□□□□□ -0.98
COL28A1-203ENST00000435823 MPPED1O15442 326 aa8.93□□□□□ -0.98
COL28A1-203ENST00000435823 RAMP3O60896 148 aa8.93□□□□□ -0.98
COL28A1-203ENST00000435823 PGLYRP1O75594 196 aaPredicted RBP8.93□□□□□ -0.98
COL28A1-203ENST00000435823 KBTBD11O94819 623 aa8.93□□□□□ -0.98
COL28A1-203ENST00000435823 CD3DP04234 171 aa8.93□□□□□ -0.98
COL28A1-203ENST00000435823 RLN1P04808 185 aa8.93□□□□□ -0.98
COL28A1-203ENST00000435823 UCP3P55916 312 aa8.93□□□□□ -0.98
COL28A1-203ENST00000435823 BRWD1-AS2P59051 145 aa8.93□□□□□ -0.98
COL28A1-203ENST00000435823 TAS2R31P59538 309 aa8.93□□□□□ -0.98
COL28A1-203ENST00000435823 SSBP2P81877 361 aaPredicted RBP8.93□□□□□ -0.98
COL28A1-203ENST00000435823 DGCR2P98153 550 aa8.93□□□□□ -0.98
COL28A1-203ENST00000435823 SLC38A6Q8IZM9 456 aa8.93□□□□□ -0.98
COL28A1-203ENST00000435823 VKORC1L1Q8N0U8 176 aa8.93□□□□□ -0.98
COL28A1-203ENST00000435823 ZNF491Q8N8L2 437 aa8.93□□□□□ -0.98
COL28A1-203ENST00000435823 WFDC9Q8NEX5 89 aa8.93□□□□□ -0.98
COL28A1-203ENST00000435823 MYOZ3Q8TDC0 251 aa8.93□□□□□ -0.98
COL28A1-203ENST00000435823 SMIM4Q8WVI0 70 aa8.93□□□□□ -0.98
COL28A1-203ENST00000435823 SRSF12Q8WXF0 261 aaKnown RBP8.93□□□□□ -0.98
COL28A1-203ENST00000435823 RHOVQ96L33 236 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms