RNA–Protein interactions for RNA: ENST00000435201.5

LIMK1-203, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 1,883 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-203ENST00000435201 HIST1H2BAQ96A08 127 aa13.78□□□□□ -0.2
LIMK1-203ENST00000435201 P2RX4Q99571 388 aa13.78□□□□□ -0.2
LIMK1-203ENST00000435201 ZNF251Q9BRH9 671 aa13.78□□□□□ -0.2
LIMK1-203ENST00000435201 NIPSNAP3BQ9BS92 247 aa13.78□□□□□ -0.2
LIMK1-203ENST00000435201 NPCDR1Q9BY65 106 aa13.78□□□□□ -0.2
LIMK1-203ENST00000435201 SAP30LQ9HAJ7 183 aa13.78□□□□□ -0.2
LIMK1-203ENST00000435201 SLC39A9Q9NUM3 307 aa13.78□□□□□ -0.2
LIMK1-203ENST00000435201 LINC00312Q9Y6C7 94 aa13.78□□□□□ -0.2
LIMK1-203ENST00000435201 A0A1W2PPE3 182 aa13.77□□□□□ -0.21
LIMK1-203ENST00000435201 ZFP92A6NM28 416 aa13.77□□□□□ -0.21
LIMK1-203ENST00000435201 TMPRSS2O15393 492 aa13.77□□□□□ -0.21
LIMK1-203ENST00000435201 TSPAN9O75954 239 aa13.77□□□□□ -0.21
LIMK1-203ENST00000435201 MDKP21741 143 aaPredicted RBP13.77□□□□□ -0.21
LIMK1-203ENST00000435201 RAB13P51153 203 aa13.77□□□□□ -0.21
LIMK1-203ENST00000435201 CEBPGP53567 150 aa13.77□□□□□ -0.21
LIMK1-203ENST00000435201 ADAM5Q6NVV9 412 aa13.77□□□□□ -0.21
LIMK1-203ENST00000435201 ACSM6Q6P461 480 aa13.77□□□□□ -0.21
LIMK1-203ENST00000435201 C1orf229Q6ZS94 237 aaPredicted RBP13.77□□□□□ -0.21
LIMK1-203ENST00000435201 LYG1Q8N1E2 194 aa13.77□□□□□ -0.21
LIMK1-203ENST00000435201 TVP23CQ96ET8 276 aa13.77□□□□□ -0.21
LIMK1-203ENST00000435201 VKORC1Q9BQB6 163 aa13.77□□□□□ -0.21
LIMK1-203ENST00000435201 GAL3ST2Q9H3Q3 398 aa13.77□□□□□ -0.21
LIMK1-203ENST00000435201 DCAF16Q9NXF7 216 aa13.77□□□□□ -0.21
LIMK1-203ENST00000435201 RPUSD1Q9UJJ7 312 aaKnown RBP13.77□□□□□ -0.21
LIMK1-203ENST00000435201 MSRB2Q9Y3D2 182 aa13.77□□□□□ -0.21
LIMK1-203ENST00000435201 TRGV8A0A0C4DH27 118 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 CTXND1A0A1B0GTU2 59 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 SOX15O60248 233 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 FGF8P55075 233 aaPredicted RBP13.76□□□□□ -0.21
LIMK1-203ENST00000435201 TMPRSS3P57727 454 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 MEF2CQ06413 473 aaPredicted RBP13.76□□□□□ -0.21
LIMK1-203ENST00000435201 UTF1Q5T230 341 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 SLC35E3Q7Z769 313 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 TGIF2LYQ8IUE0 185 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 RPP25LQ8N5L8 163 aaKnown RBP13.76□□□□□ -0.21
LIMK1-203ENST00000435201 LHX4Q969G2 390 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 GGACTQ9BVM4 153 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 SLC25A10Q9UBX3 287 aaPredicted RBP13.76□□□□□ -0.21
LIMK1-203ENST00000435201 VAX2Q9UIW0 290 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 C15orf61A6NNL5 157 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 IGKV1D-33P01593 117 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 IGKV1-33P01594 117 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 FBP1P09467 338 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 DAOP14920 347 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 NDUFB7P17568 137 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 VDAC2P45880 294 aaPredicted RBP13.76□□□□□ -0.21
LIMK1-203ENST00000435201 RAB5BP61020 215 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 TFF3Q07654 80 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 RBMS3Q6XE24 437 aaKnown RBP13.76□□□□□ -0.21
LIMK1-203ENST00000435201 SLC25A48Q6ZT89 311 aaKnown RBP13.76□□□□□ -0.21
LIMK1-203ENST00000435201 VKORC1L1Q8N0U8 176 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 RAB39BQ96DA2 213 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 WFIKKN1Q96NZ8 548 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 COL25A1Q9BXS0 654 aaPredicted RBP13.76□□□□□ -0.21
LIMK1-203ENST00000435201 HEYLQ9NQ87 328 aaPredicted RBP13.76□□□□□ -0.21
LIMK1-203ENST00000435201 DOCK11Q5JSL3 2073 aa13.76□□□□□ -0.21
LIMK1-203ENST00000435201 PPIAL4EA0A075B759 164 aa13.75□□□□□ -0.21
LIMK1-203ENST00000435201 A0A087WWC5 75 aa13.75□□□□□ -0.21
LIMK1-203ENST00000435201 PPIAL4DF5H284 164 aa13.75□□□□□ -0.21
LIMK1-203ENST00000435201 IFNA10P01566 189 aa13.75□□□□□ -0.21
LIMK1-203ENST00000435201 PPIAL4FP0DN26 164 aa13.75□□□□□ -0.21
LIMK1-203ENST00000435201 GNG10P50151 68 aa13.75□□□□□ -0.21
LIMK1-203ENST00000435201 RPS16P62249 146 aaKnown RBP13.75□□□□□ -0.21
LIMK1-203ENST00000435201 POU2AF1Q16633 256 aa13.75□□□□□ -0.21
LIMK1-203ENST00000435201 FFAR4Q5NUL3 377 aa13.75□□□□□ -0.21
LIMK1-203ENST00000435201 ZNF383Q8NA42 475 aa13.75□□□□□ -0.21
LIMK1-203ENST00000435201 OR10G9Q8NGN4 311 aa13.75□□□□□ -0.21
LIMK1-203ENST00000435201 OR10G7Q8NGN6 311 aa13.75□□□□□ -0.21
LIMK1-203ENST00000435201 ACTR3CQ9C0K3 210 aaPredicted RBP13.75□□□□□ -0.21
LIMK1-203ENST00000435201 BIN3Q9NQY0 253 aa13.75□□□□□ -0.21
LIMK1-203ENST00000435201 WDR83OSQ9Y284 106 aa13.75□□□□□ -0.21
LIMK1-203ENST00000435201 PPIAL4AQ9Y536 164 aa13.75□□□□□ -0.21
LIMK1-203ENST00000435201 A0A1W2PPE2 198 aa13.74□□□□□ -0.21
LIMK1-203ENST00000435201 A0A1W2PPH5 198 aa13.74□□□□□ -0.21
LIMK1-203ENST00000435201 TMEM178BH3BS89 294 aa13.74□□□□□ -0.21
LIMK1-203ENST00000435201 MPDU1O75352 247 aa13.74□□□□□ -0.21
LIMK1-203ENST00000435201 HRASP01112 189 aa13.74□□□□□ -0.21
LIMK1-203ENST00000435201 FAM87AP0C7U9 286 aa13.74□□□□□ -0.21
LIMK1-203ENST00000435201 CD1BP29016 333 aa13.74□□□□□ -0.21
LIMK1-203ENST00000435201 TAGLN2P37802 199 aaKnown RBP13.74□□□□□ -0.21
LIMK1-203ENST00000435201 ISOC2Q96AB3 205 aa13.74□□□□□ -0.21
LIMK1-203ENST00000435201 RHOVQ96L33 236 aa13.74□□□□□ -0.21
LIMK1-203ENST00000435201 TCF19Q9Y242 345 aa13.74□□□□□ -0.21
LIMK1-203ENST00000435201 FOXA2Q9Y261 457 aaPredicted RBP13.74□□□□□ -0.21
LIMK1-203ENST00000435201 PTPRZ1P23471 2315 aaPredicted RBP13.74□□□□□ -0.21
LIMK1-203ENST00000435201 ICE1Q9Y2F5 2266 aa13.74□□□□□ -0.21
LIMK1-203ENST00000435201 TRAV3A0A0B4J244 114 aa13.74□□□□□ -0.21
LIMK1-203ENST00000435201 C1orf196B1AJZ1 125 aa13.74□□□□□ -0.21
LIMK1-203ENST00000435201 GFRA3O60609 400 aa13.74□□□□□ -0.21
LIMK1-203ENST00000435201 OR2C1O95371 312 aa13.74□□□□□ -0.21
LIMK1-203ENST00000435201 HOXA1P49639 335 aaPredicted RBP13.74□□□□□ -0.21
LIMK1-203ENST00000435201 UCNP55089 124 aa13.74□□□□□ -0.21
LIMK1-203ENST00000435201 RAB11AP62491 216 aa13.74□□□□□ -0.21
LIMK1-203ENST00000435201 NCMAPQ5T1S8 102 aa13.74□□□□□ -0.21
LIMK1-203ENST00000435201 OR4A47Q6IF82 309 aa13.74□□□□□ -0.21
LIMK1-203ENST00000435201 CA5BP1Q8WTZ4 195 aa13.74□□□□□ -0.21
LIMK1-203ENST00000435201 SAV1Q9H4B6 383 aaPredicted RBP13.74□□□□□ -0.21
LIMK1-203ENST00000435201 MAS1LP35410 378 aa13.73□□□□□ -0.21
LIMK1-203ENST00000435201 DLK1P80370 383 aa13.73□□□□□ -0.21
LIMK1-203ENST00000435201 PNRC1Q12796 327 aaPredicted RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms