RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 FOXA1P55317 472 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 KLF3P57682 345 aaPredicted RBP2.82□□□□□ -1.96
VPS54-204ENST00000416400 RPS20P60866 119 aaKnown RBP2.82□□□□□ -1.96
VPS54-204ENST00000416400 H3F3AP84243 136 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 FABP5Q01469 135 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 JOSD1Q15040 202 aaPredicted RBP2.82□□□□□ -1.96
VPS54-204ENST00000416400 OR8G1Q15617 311 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 IQCJQ1A5X6 159 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 TMEM241Q24JQ0 296 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 GOLGA7BQ2TAP0 167 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 AKIRIN2Q53H80 203 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 UBE2NLQ5JXB2 153 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 SFXN4Q6P4A7 337 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 OPN5Q6U736 354 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 ZFP82Q8N141 532 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 ZNF645Q8N7E2 425 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 LFNGQ8NES3 379 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 SLC30A7Q8NEW0 376 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 OR5D16Q8NGK9 328 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 OR13C8Q8NGS7 320 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 LINC01560Q8TB33 94 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 NEK7Q8TDX7 302 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 GHSRQ92847 366 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 ZFP3Q96NJ6 502 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 OR2M4Q96R27 311 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 MAP1LC3CQ9BXW4 147 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 TLNRD1Q9H1K6 362 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 ATG5Q9H1Y0 275 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 ARV1Q9H2C2 271 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 TPT1P8Q9HAU6 139 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 RHOFQ9HBH0 211 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 RDH14Q9HBH5 336 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 PARP11Q9NR21 331 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 ACER3Q9NUN7 267 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 RBM22Q9NW64 420 aaKnown RBP eCLIP2.82□□□□□ -1.966e-8■■□□□ 13.5
VPS54-204ENST00000416400 TVP23BQ9NYZ1 205 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 CLEC2DQ9UHP7 191 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 VAX2Q9UIW0 290 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 OR52A1Q9UKL2 312 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 MMACHCQ9Y4U1 282 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 V9GYY9 64 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 DSPPQ9NZW4 1301 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 DIP2BQ9P265 1576 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 CICQ96RK0 1608 aaPredicted RBP2.82□□□□□ -1.96
VPS54-204ENST00000416400 ADAMTS7Q9UKP4 1686 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 TOGARAM1Q9Y4F4 1720 aa2.82□□□□□ -1.96
VPS54-204ENST00000416400 DOCK9Q9BZ29 2069 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 A0A0A6YYD5 115 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 IGHV7-4-1A0A0J9YVY3 117 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 ANKRD20A5PA0PJZ0 165 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 C20orf202A1L168 122 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 C7orf77A4D0Y5 90 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 PPP5D1E7EU14 171 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 MANBAO00462 879 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 TP53I11O14683 189 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 TRAPPC6AO75865 159 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 TRBV12-3P01733 135 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 MT-ND4P03905 459 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 C8GP07360 202 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 RHOCP08134 193 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 LINC00869P0C866 280 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 AKAIN1P0CW23 69 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 ZNF35P13682 527 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 GTF2F2P13984 249 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 CELP19835 753 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 NPY1RP25929 384 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 G0S2P27469 103 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 LOXP28300 417 aaPredicted RBP2.81□□□□□ -1.96
VPS54-204ENST00000416400 ATP5J2P56134 94 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 NDUFA6P56556 154 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 RPS25P62851 125 aaKnown RBP2.81□□□□□ -1.96
VPS54-204ENST00000416400 RPL38P63173 70 aaKnown RBP2.81□□□□□ -1.96
VPS54-204ENST00000416400 ZBTB6Q15916 424 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 SCGB2B2Q4G0G5 96 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 C6orf99Q4VX62 202 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 ABCA11PQ4W5N1 156 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 RNASE13Q5GAN3 156 aaKnown RBP2.81□□□□□ -1.96
VPS54-204ENST00000416400 PYY3Q5JQD4 70 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 COL5A1-AS1Q5SY13 56 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 SMARCD3Q6STE5 483 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 TMEM91Q6ZNR0 172 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 SSX7Q7RTT5 188 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 MSRB3Q8IXL7 192 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 DEFB106AQ8N104 65 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 LRRC52Q8N7C0 313 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 OR11G2Q8NGC1 345 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 OR10D4PQ8NGN7 298 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 OR51A7Q8NH64 312 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 CIRBP-AS1Q8TBR5 109 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 CACNG8Q8WXS5 425 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 TMEM159Q96B96 161 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 GABRG3Q99928 467 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 NIPSNAP1Q9BPW8 284 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 AIF1LQ9BQI0 150 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 SFXN3Q9BWM7 321 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 C1QTNF6Q9BXI9 259 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 POTEKPQ9BYX7 375 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 COA1Q9GZY4 146 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 NMNAT1Q9HAN9 279 aaPredicted RBP2.81□□□□□ -1.96
VPS54-204ENST00000416400 ZNF302Q9NR11 478 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms