RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 GON7Q9BXV9 100 aa10.47□□□□□ -0.73
VPS28-202ENST00000377348 ZNF580Q9UK33 172 aa10.47□□□□□ -0.73
VPS28-202ENST00000377348 V9GYH0 126 aa10.47□□□□□ -0.73
VPS28-202ENST00000377348 PGLYRP1O75594 196 aaPredicted RBP10.46□□□□□ -0.73
VPS28-202ENST00000377348 CNIH1O95406 144 aa10.46□□□□□ -0.73
VPS28-202ENST00000377348 RAB3DO95716 219 aa10.46□□□□□ -0.73
VPS28-202ENST00000377348 IGHG4P01861 327 aa10.46□□□□□ -0.73
VPS28-202ENST00000377348 IFNA6P05013 189 aa10.46□□□□□ -0.73
VPS28-202ENST00000377348 TBPP20226 339 aa10.46□□□□□ -0.73
VPS28-202ENST00000377348 TAS2R19P59542 299 aa10.46□□□□□ -0.73
VPS28-202ENST00000377348 RPL23AP62750 156 aaKnown RBP10.46□□□□□ -0.73
VPS28-202ENST00000377348 CATR1Q13166 79 aa10.46□□□□□ -0.73
VPS28-202ENST00000377348 PHLDA2Q53GA4 152 aa10.46□□□□□ -0.73
VPS28-202ENST00000377348 STEAP1BQ6NZ63 245 aa10.46□□□□□ -0.73
VPS28-202ENST00000377348 ZNF562Q6V9R5 426 aa10.46□□□□□ -0.73
VPS28-202ENST00000377348 SSX9Q7RTT3 188 aa10.46□□□□□ -0.73
VPS28-202ENST00000377348 COMMD1Q8N668 190 aa10.46□□□□□ -0.73
VPS28-202ENST00000377348 TEX45Q8NA69 505 aa10.46□□□□□ -0.73
VPS28-202ENST00000377348 LFNGQ8NES3 379 aa10.46□□□□□ -0.73
VPS28-202ENST00000377348 CASTOR1Q8WTX7 329 aa10.46□□□□□ -0.73
VPS28-202ENST00000377348 ARPC1AQ92747 370 aa10.46□□□□□ -0.73
VPS28-202ENST00000377348 DGCR14Q96DF8 476 aaKnown RBP10.46□□□□□ -0.73
VPS28-202ENST00000377348 RABL2AQ9UBK7 228 aaPredicted RBP10.46□□□□□ -0.73
VPS28-202ENST00000377348 RABL2BQ9UNT1 228 aa10.46□□□□□ -0.73
VPS28-202ENST00000377348 A0A1W2PN81 502 aa10.45□□□□□ -0.74
VPS28-202ENST00000377348 GPR31O00270 319 aa10.45□□□□□ -0.74
VPS28-202ENST00000377348 GSTZ1O43708 216 aaPredicted RBP10.45□□□□□ -0.74
VPS28-202ENST00000377348 SOX15O60248 233 aa10.45□□□□□ -0.74
VPS28-202ENST00000377348 ELANEP08246 267 aa10.45□□□□□ -0.74
VPS28-202ENST00000377348 S100A5P33763 92 aa10.45□□□□□ -0.74
VPS28-202ENST00000377348 CHRNA7P36544 502 aa10.45□□□□□ -0.74
VPS28-202ENST00000377348 KIR2DS2P43631 304 aa10.45□□□□□ -0.74
VPS28-202ENST00000377348 CRIP2P52943 208 aaPredicted RBP10.45□□□□□ -0.74
VPS28-202ENST00000377348 SSBP1Q04837 148 aaKnown RBP10.45□□□□□ -0.74
VPS28-202ENST00000377348 FOXE3Q13461 319 aa10.45□□□□□ -0.74
VPS28-202ENST00000377348 C19orf54Q5BKX5 351 aa10.45□□□□□ -0.74
VPS28-202ENST00000377348 CXorf66Q5JRM2 361 aaPredicted RBP10.45□□□□□ -0.74
VPS28-202ENST00000377348 LHFPL1Q86WI0 220 aa10.45□□□□□ -0.74
VPS28-202ENST00000377348 ARRDC1Q8N5I2 433 aa10.45□□□□□ -0.74
VPS28-202ENST00000377348 MINDY2Q8NBR6 621 aa10.45□□□□□ -0.74
VPS28-202ENST00000377348 BORCS5Q969J3 196 aa10.45□□□□□ -0.74
VPS28-202ENST00000377348 RSRP1Q9BUV0 290 aa10.45□□□□□ -0.74
VPS28-202ENST00000377348 KLK15Q9H2R5 256 aa10.45□□□□□ -0.74
VPS28-202ENST00000377348 ZNF430Q9H8G1 570 aaPredicted RBP10.45□□□□□ -0.74
VPS28-202ENST00000377348 NDUFA13Q9P0J0 144 aa10.45□□□□□ -0.74
VPS28-202ENST00000377348 NUBP2Q9Y5Y2 271 aa10.45□□□□□ -0.74
VPS28-202ENST00000377348 NOTCH1P46531 2555 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 S1PR2O95136 353 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 IGLV1-40P01703 118 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 ZNF735P0CB33 412 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 APELAP0DMC3 54 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 PF4V1P10720 104 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 PGAM2P15259 253 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 PI3P19957 117 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 PSMB8P28062 276 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 PPP5CP53041 499 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 ZNF79Q15937 498 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 TNXAQ16473 311 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 PRSS8Q16651 343 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 SCGB2B2Q4G0G5 96 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 PYDC2Q56P42 97 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 C10orf55Q5SWW7 151 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 UNQ5815/PRO19632Q6UWF5 114 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 C8orf86Q6ZUL3 223 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 CCDC190Q86UF4 302 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 CMTM1Q8IZ96 169 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 RNF152Q8N8N0 203 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 KLHL30-AS1Q8NEE0 82 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 OR4F17Q8NGA8 305 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 OR4C16Q8NGL9 310 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 OR4F4Q96R69 305 aa10.44□□□□□ -0.74
VPS28-202ENST00000377348 TNCP24821 2201 aa10.43□□□□□ -0.74
VPS28-202ENST00000377348 ANKRD20A5PA0PJZ0 165 aa10.43□□□□□ -0.74
VPS28-202ENST00000377348 NUDT19A8MXV4 375 aa10.43□□□□□ -0.74
VPS28-202ENST00000377348 RBFOX2O43251 390 aaKnown RBP eCLIP10.43□□□□□ -0.744e-8■■■■□ 26.4
VPS28-202ENST00000377348 OR2A4O95047 310 aa10.43□□□□□ -0.74
VPS28-202ENST00000377348 HPRT1P00492 218 aa10.43□□□□□ -0.74
VPS28-202ENST00000377348 AKAIN1P0CW23 69 aa10.43□□□□□ -0.74
VPS28-202ENST00000377348 RPA2P15927 270 aa10.43□□□□□ -0.74
VPS28-202ENST00000377348 UCP3P55916 312 aa10.43□□□□□ -0.74
VPS28-202ENST00000377348 TMEM267Q0VDI3 215 aaPredicted RBP10.43□□□□□ -0.74
VPS28-202ENST00000377348 ASPHD1Q5U4P2 390 aa10.43□□□□□ -0.74
VPS28-202ENST00000377348 LPCAT3Q6P1A2 487 aa10.43□□□□□ -0.74
VPS28-202ENST00000377348 TBC1D26Q86UD7 250 aa10.43□□□□□ -0.74
VPS28-202ENST00000377348 SLC38A6Q8IZM9 456 aa10.43□□□□□ -0.74
VPS28-202ENST00000377348 PUSL1Q8N0Z8 303 aaKnown RBP10.43□□□□□ -0.74
VPS28-202ENST00000377348 POC5Q8NA72 575 aa10.43□□□□□ -0.74
VPS28-202ENST00000377348 OR6Q1Q8NGQ2 317 aa10.43□□□□□ -0.74
VPS28-202ENST00000377348 MRGPRFQ96AM1 343 aa10.43□□□□□ -0.74
VPS28-202ENST00000377348 RHOVQ96L33 236 aa10.43□□□□□ -0.74
VPS28-202ENST00000377348 DUX3Q96PT4 197 aa10.43□□□□□ -0.74
VPS28-202ENST00000377348 OR2A7Q96R45 310 aa10.43□□□□□ -0.74
VPS28-202ENST00000377348 THAP7Q9BT49 309 aaPredicted RBP10.43□□□□□ -0.74
VPS28-202ENST00000377348 ZFP57Q9NU63 452 aa10.43□□□□□ -0.74
VPS28-202ENST00000377348 FOXA2Q9Y261 457 aaPredicted RBP10.43□□□□□ -0.74
VPS28-202ENST00000377348 MSGN1A6NI15 193 aa10.42□□□□□ -0.74
VPS28-202ENST00000377348 KBTBD11O94819 623 aa10.42□□□□□ -0.74
VPS28-202ENST00000377348 HRASP01112 189 aa10.42□□□□□ -0.74
VPS28-202ENST00000377348 MYOD1P15172 320 aa10.42□□□□□ -0.74
VPS28-202ENST00000377348 F2RP25116 425 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms