RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 CFDP00746 253 aaPredicted RBP11.71□□□□□ -0.53
COL4A1-201ENST00000375820 NPPCP23582 126 aa11.71□□□□□ -0.53
COL4A1-201ENST00000375820 RND3P61587 244 aa11.71□□□□□ -0.53
COL4A1-201ENST00000375820 SLC25A47Q6Q0C1 308 aa11.71□□□□□ -0.53
COL4A1-201ENST00000375820 KCNK17Q96T54 332 aa11.71□□□□□ -0.53
COL4A1-201ENST00000375820 TRGV3P03979 118 aa11.71□□□□□ -0.53
COL4A1-201ENST00000375820 CDC42EP3Q9UKI2 254 aa11.71□□□□□ -0.53
COL4A1-201ENST00000375820 GLMPQ8WWB7 406 aa11.71□□□□□ -0.53
COL4A1-201ENST00000375820 COL25A1Q9BXS0 654 aaPredicted RBP11.71□□□□□ -0.53
COL4A1-201ENST00000375820 OTOFQ9HC10 1997 aa11.71□□□□□ -0.54
COL4A1-201ENST00000375820 CBLN1P23435 193 aa11.71□□□□□ -0.54
COL4A1-201ENST00000375820 ICAM4Q14773 271 aa11.71□□□□□ -0.54
COL4A1-201ENST00000375820 GALNT14Q96FL9 552 aa11.71□□□□□ -0.54
COL4A1-201ENST00000375820 TDRD6O60522 2096 aaKnown RBP11.71□□□□□ -0.54
COL4A1-201ENST00000375820 VAX1Q5SQQ9 334 aa11.71□□□□□ -0.54
COL4A1-201ENST00000375820 LHFPL5Q8TAF8 219 aa11.71□□□□□ -0.54
COL4A1-201ENST00000375820 C5orf66Q9H5L9 145 aa11.71□□□□□ -0.54
COL4A1-201ENST00000375820 GPR132Q9UNW8 380 aa11.71□□□□□ -0.54
COL4A1-201ENST00000375820 SCN7AQ01118 1682 aa11.71□□□□□ -0.54
COL4A1-201ENST00000375820 C8orf88P0DMB2 117 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 Q5BKY6 102 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 KCNS1Q96KK3 526 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 KIAA1217Q5T5P2 1943 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 ZNF98A6NK75 572 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 CEACAM4O75871 244 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 EEF1AKMT3Q96AZ1 226 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 TMEM74BQ9NUR3 256 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 AHRRA9YTQ3 701 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 LIMS1P48059 325 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 P2RY6Q15077 328 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 FAM209BQ5JX69 171 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 PGPEP1Q9NXJ5 209 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 CELA3AP09093 270 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 SFTPCP11686 197 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 CD69Q07108 199 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 OR51G1Q8NGK1 321 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 NABP2Q9BQ15 211 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 FAM206AQ9NX38 181 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 EPOPA6NHQ4 379 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 TIAF1O95411 115 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 SLC25A34Q6PIV7 304 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 WFDC12Q8WWY7 111 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 FOXA2Q9Y261 457 aaPredicted RBP11.7□□□□□ -0.54
COL4A1-201ENST00000375820 HS3ST3B1Q9Y662 390 aa11.7□□□□□ -0.54
COL4A1-201ENST00000375820 KLF4O43474 513 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 RNASE4P34096 147 aaKnown RBP11.69□□□□□ -0.54
COL4A1-201ENST00000375820 SLC17A3O00476 420 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 DNAL4O96015 105 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 FOLR2P14207 255 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 HSPE1P61604 102 aaKnown RBP11.69□□□□□ -0.54
COL4A1-201ENST00000375820 SNRPD3P62318 126 aaKnown RBP11.69□□□□□ -0.54
COL4A1-201ENST00000375820 PCOLCEQ15113 449 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 CENPWQ5EE01 88 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 SFTA2Q6UW10 78 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 AQP3Q92482 292 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 IMMP2LQ96T52 175 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 CLEC7AQ9BXN2 247 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 IGLV1-36A0A0B4J1U3 117 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 TRAV24A0A0B4J272 114 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 NMBP08949 121 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 COX6A1P12074 109 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.69□□□□□ -0.54
COL4A1-201ENST00000375820 SLC25A38Q96DW6 304 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 SFRP2Q96HF1 295 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 PIKFYVEQ9Y2I7 2098 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 C5orf67F2Z3F1 127 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 GFRA3O60609 400 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 NUDT11Q96G61 164 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 IGHV3-11P01762 117 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 TSPAN7P41732 249 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 FAM27E3Q08E93 113 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 OR10AG1Q8NH19 301 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 FBXL15Q9H469 300 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 PPP1R3EQ9H7J1 279 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 TCF19Q9Y242 345 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 H2BFSP57053 126 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 C14orf144Q96I85 54 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 DUX3Q96PT4 197 aa11.69□□□□□ -0.54
COL4A1-201ENST00000375820 NPIPB11E5RHQ5 1161 aa11.68□□□□□ -0.54
COL4A1-201ENST00000375820 NDUFA3O95167 84 aa11.68□□□□□ -0.54
COL4A1-201ENST00000375820 HLA-DQA1P01909 254 aa11.68□□□□□ -0.54
COL4A1-201ENST00000375820 PDLIM4P50479 330 aa11.68□□□□□ -0.54
COL4A1-201ENST00000375820 KIR2DL4Q99706 377 aa11.68□□□□□ -0.54
COL4A1-201ENST00000375820 KCNE5Q9UJ90 142 aa11.68□□□□□ -0.54
COL4A1-201ENST00000375820 PILRAQ9UKJ1 303 aa11.68□□□□□ -0.54
COL4A1-201ENST00000375820 RP1P56715 2156 aa11.68□□□□□ -0.54
COL4A1-201ENST00000375820 SELENOTP62341 195 aa11.68□□□□□ -0.54
COL4A1-201ENST00000375820 WDR82Q6UXN9 313 aa11.68□□□□□ -0.54
COL4A1-201ENST00000375820 SNRNP200O75643 2136 aaKnown RBP11.68□□□□□ -0.54
COL4A1-201ENST00000375820 RPS11P62280 158 aaKnown RBP eCLIP11.68□□□□□ -0.54
COL4A1-201ENST00000375820 GFI1BQ5VTD9 330 aa11.68□□□□□ -0.54
COL4A1-201ENST00000375820 DRAM1Q8N682 238 aa11.68□□□□□ -0.54
COL4A1-201ENST00000375820 IGKV1D-33P01593 117 aa11.68□□□□□ -0.54
COL4A1-201ENST00000375820 IGKV1-33P01594 117 aa11.68□□□□□ -0.54
COL4A1-201ENST00000375820 HLA-DRB1P01911 266 aa11.68□□□□□ -0.54
COL4A1-201ENST00000375820 TRGC1P0CF51 173 aa11.68□□□□□ -0.54
COL4A1-201ENST00000375820 SAA1P0DJI8 122 aaPredicted RBP11.68□□□□□ -0.54
COL4A1-201ENST00000375820 TMEM95Q3KNT9 176 aa11.68□□□□□ -0.54
COL4A1-201ENST00000375820 TRBV5-5A0A0J9YX44 114 aa11.68□□□□□ -0.54
COL4A1-201ENST00000375820 FSTP19883 344 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms