RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 CNPY1Q3B7I2 92 aa11.69□□□□□ -0.54
COL9A1-204ENST00000370496 TRIQKQ629K1 86 aa11.69□□□□□ -0.54
COL9A1-204ENST00000370496 HIST2H2BDQ6DRA6 164 aa11.69□□□□□ -0.54
COL9A1-204ENST00000370496 C10orf99Q6UWK7 81 aa11.69□□□□□ -0.54
COL9A1-204ENST00000370496 IDO2Q6ZQW0 420 aa11.69□□□□□ -0.54
COL9A1-204ENST00000370496 TOMM5Q8N4H5 51 aa11.69□□□□□ -0.54
COL9A1-204ENST00000370496 CD300LFQ8TDQ1 290 aa11.69□□□□□ -0.54
COL9A1-204ENST00000370496 WIPF2Q8TF74 440 aaPredicted RBP11.69□□□□□ -0.54
COL9A1-204ENST00000370496 ARPC1AQ92747 370 aa11.69□□□□□ -0.54
COL9A1-204ENST00000370496 PRRT1Q99946 306 aa11.69□□□□□ -0.54
COL9A1-204ENST00000370496 BATF3Q9NR55 127 aa11.69□□□□□ -0.54
COL9A1-204ENST00000370496 SLC2A9Q9NRM0 540 aa11.69□□□□□ -0.54
COL9A1-204ENST00000370496 SRRM4A7MD48 611 aaKnown RBP11.68□□□□□ -0.54
COL9A1-204ENST00000370496 FCN1O00602 326 aa11.68□□□□□ -0.54
COL9A1-204ENST00000370496 PGLYRP1O75594 196 aaPredicted RBP11.68□□□□□ -0.54
COL9A1-204ENST00000370496 CNIH1O95406 144 aa11.68□□□□□ -0.54
COL9A1-204ENST00000370496 HRASP01112 189 aa11.68□□□□□ -0.54
COL9A1-204ENST00000370496 IGF1P05019 195 aa11.68□□□□□ -0.54
COL9A1-204ENST00000370496 ECI1P42126 302 aa11.68□□□□□ -0.54
COL9A1-204ENST00000370496 CX3CL1P78423 397 aa11.68□□□□□ -0.54
COL9A1-204ENST00000370496 VKORC1L1Q8N0U8 176 aa11.68□□□□□ -0.54
COL9A1-204ENST00000370496 TERB2Q8NHR7 220 aa11.68□□□□□ -0.54
COL9A1-204ENST00000370496 GRPEL2Q8TAA5 225 aa11.68□□□□□ -0.54
COL9A1-204ENST00000370496 VSTM2AQ8TAG5 236 aa11.68□□□□□ -0.54
COL9A1-204ENST00000370496 ZNF486Q96H40 463 aaPredicted RBP11.68□□□□□ -0.54
COL9A1-204ENST00000370496 CITED2Q99967 270 aaPredicted RBP11.68□□□□□ -0.54
COL9A1-204ENST00000370496 SRRQ9GZT4 340 aa11.68□□□□□ -0.54
COL9A1-204ENST00000370496 ZNF580Q9UK33 172 aa11.68□□□□□ -0.54
COL9A1-204ENST00000370496 TRAV41A0A0B4J266 112 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 ACTL6BO94805 426 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 OPN1MWP04001 364 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 ZNF735P0CB33 412 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 OPN1MW2P0DN77 364 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 OPN1MW3P0DN78 364 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 PI3P19957 117 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 ZNF57Q68EA5 555 aaPredicted RBP11.67□□□□□ -0.54
COL9A1-204ENST00000370496 SSX9Q7RTT3 188 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 TBC1D26Q86UD7 250 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 COMMD1Q8N668 190 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 GDPD1Q8N9F7 314 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 CCDC71LQ8N9Z2 235 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 TEX45Q8NA69 505 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 OR51S1Q8NGJ8 323 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 OR13C8Q8NGS7 320 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 SGMS2Q8NHU3 365 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 ZFAND1Q8TCF1 268 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 MARCH1Q8TCQ1 289 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 AIFM2Q9BRQ8 373 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 FAM103A1Q9BTL3 118 aaKnown RBP11.67□□□□□ -0.54
COL9A1-204ENST00000370496 COMMD9Q9P000 198 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 SCP2D1Q9UJQ7 156 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 C14orf166Q9Y224 244 aaKnown RBP11.67□□□□□ -0.54
COL9A1-204ENST00000370496 WSB1Q9Y6I7 421 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 A0A1W2PRX2 142 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 TCRBV4S1A1TA0A5B7 111 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 S1PR2O95136 353 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 HPRT1P00492 218 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 CRYGBP07316 175 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 F2RP25116 425 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 PIGPP57054 158 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 BRWD1-AS2P59051 145 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 TAS2R31P59538 309 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 ERVK-16P61578 105 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 PJVKQ0ZLH3 352 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 KLF9Q13886 244 aaPredicted RBP11.67□□□□□ -0.54
COL9A1-204ENST00000370496 FXYD3Q14802 87 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 TNXAQ16473 311 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 PRSS8Q16651 343 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 NSUN5P1Q3KNT7 163 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 ZNF562Q6V9R5 426 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 NDUFA11Q86Y39 141 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 DMBX1Q8NFW5 382 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 RHOVQ96L33 236 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 SLC2A8Q9NY64 477 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 PTTG2Q9NZH5 202 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 COPZ2Q9P299 210 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 FBXO7Q9Y3I1 522 aa11.67□□□□□ -0.54
COL9A1-204ENST00000370496 G3V318 75 aa11.66□□□□□ -0.54
COL9A1-204ENST00000370496 KBTBD11O94819 623 aa11.66□□□□□ -0.54
COL9A1-204ENST00000370496 OR2A4O95047 310 aa11.66□□□□□ -0.54
COL9A1-204ENST00000370496 NQO2P16083 231 aa11.66□□□□□ -0.54
COL9A1-204ENST00000370496 RND3P61587 244 aa11.66□□□□□ -0.54
COL9A1-204ENST00000370496 ZNF45Q02386 682 aa11.66□□□□□ -0.54
COL9A1-204ENST00000370496 SURF2Q15527 256 aaPredicted RBP11.66□□□□□ -0.54
COL9A1-204ENST00000370496 TEX38Q6PEX7 206 aa11.66□□□□□ -0.54
COL9A1-204ENST00000370496 TCTEX1D1Q8N7M0 179 aa11.66□□□□□ -0.54
COL9A1-204ENST00000370496 R3HDM4Q96D70 268 aa11.66□□□□□ -0.54
COL9A1-204ENST00000370496 OR2A7Q96R45 310 aa11.66□□□□□ -0.54
COL9A1-204ENST00000370496 PHB2Q99623 299 aa11.66□□□□□ -0.54
COL9A1-204ENST00000370496 ZNF430Q9H8G1 570 aaPredicted RBP11.66□□□□□ -0.54
COL9A1-204ENST00000370496 PLEKHA2Q9HB19 425 aa11.66□□□□□ -0.54
COL9A1-204ENST00000370496 HRASLSQ9HDD0 168 aa11.66□□□□□ -0.54
COL9A1-204ENST00000370496 TSSC4Q9Y5U2 329 aaPredicted RBP11.66□□□□□ -0.54
COL9A1-204ENST00000370496 A0A1W2PN81 502 aa11.65□□□□□ -0.55
COL9A1-204ENST00000370496 ARPC1BO15143 372 aaKnown RBP11.65□□□□□ -0.55
COL9A1-204ENST00000370496 CTSDP07339 412 aaPredicted RBP11.65□□□□□ -0.55
COL9A1-204ENST00000370496 CHRNA7P36544 502 aa11.65□□□□□ -0.55
COL9A1-204ENST00000370496 CFHR3Q02985 330 aa11.65□□□□□ -0.55
COL9A1-204ENST00000370496 TMEM267Q0VDI3 215 aaPredicted RBP11.65□□□□□ -0.55
COL9A1-204ENST00000370496 TCTEX1D4Q5JR98 221 aa11.65□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms