RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 HOXA6P31267 233 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 SRSF6Q13247 344 aaKnown RBP10.12□□□□□ -0.79
CLIP3-201ENST00000360535 ACOT6Q3I5F7 207 aaPredicted RBP10.12□□□□□ -0.79
CLIP3-201ENST00000360535 VWA1Q6PCB0 445 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 TGIF2LXQ8IUE1 241 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 OR2Z1Q8NG97 314 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 LRRC29Q8WV35 223 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.12□□□□□ -0.79
CLIP3-201ENST00000360535 GRIFINA4D1Z8 144 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 C17orf112F2Z3M2 114 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 SPINK4O60575 86 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 MBP02144 154 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 MISP3Q96FF7 219 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 ZPBPQ9BS86 351 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 ATG101Q9BSB4 218 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 TRAPPC1Q9Y5R8 145 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 SPENQ96T58 3664 aaKnown RBP10.12□□□□□ -0.79
CLIP3-201ENST00000360535 FAM90A26D6RGX4 464 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 RRHO14718 337 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 SLC31A2O15432 143 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 ACTL6BO94805 426 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 CLDN14O95500 239 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 GNB1P62873 340 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 FAM201AQ5SY85 155 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 SMG1Q96Q15 3661 aaKnown RBP10.11□□□□□ -0.79
CLIP3-201ENST00000360535 PMS2P5A8MQ11 134 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 TMEM250H0YL14 139 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 AQP7O14520 342 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 FOXF2Q12947 444 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 ACP7Q6ZNF0 438 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 REC114Q7Z4M0 266 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 MANBALQ9NQG1 85 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 TET2Q6N021 2002 aaPredicted RBP10.11□□□□□ -0.79
CLIP3-201ENST00000360535 SPINT2O43291 252 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 TGOLN2O43493 480 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 OR4A8P0C604 315 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 ARL14EPLP0DKL9 152 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 CD82P27701 267 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 GCH1P30793 250 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 JOSD1Q15040 202 aaPredicted RBP10.11□□□□□ -0.79
CLIP3-201ENST00000360535 ATP6V1FQ16864 119 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 KCNIP4Q6PIL6 250 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 WDR82Q6UXN9 313 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 TMEM256Q8N2U0 113 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 ZNRF1Q8ND25 227 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 SGMS2Q8NHU3 365 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 IMMP2LQ96T52 175 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 C15orf62A8K5M9 175 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 ZNF705FA8MVS1 300 aaPredicted RBP10.11□□□□□ -0.79
CLIP3-201ENST00000360535 TCAPO15273 167 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 ZNF705DP0CH99 300 aaPredicted RBP10.11□□□□□ -0.79
CLIP3-201ENST00000360535 ZNF705BP0CI00 300 aaPredicted RBP10.11□□□□□ -0.79
CLIP3-201ENST00000360535 MYOD1P15172 320 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 IL3RAP26951 378 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 UTF1Q5T230 341 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 C11orf53Q8IXP5 236 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 DEFB123Q8N688 67 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 FER1L6-AS2Q96M78 137 aa10.11□□□□□ -0.79
CLIP3-201ENST00000360535 HES3Q5TGS1 186 aa10.1□□□□□ -0.79
CLIP3-201ENST00000360535 DEFB108BQ8NET1 73 aa10.1□□□□□ -0.79
CLIP3-201ENST00000360535 FAM122AQ96E09 287 aa10.1□□□□□ -0.79
CLIP3-201ENST00000360535 CIB3Q96Q77 187 aaPredicted RBP10.1□□□□□ -0.79
CLIP3-201ENST00000360535 TAAR6Q96RI8 345 aa10.1□□□□□ -0.79
CLIP3-201ENST00000360535 OR6C3Q9NZP0 311 aa10.1□□□□□ -0.79
CLIP3-201ENST00000360535 TIMM9Q9Y5J7 89 aa10.1□□□□□ -0.79
CLIP3-201ENST00000360535 SCO2A0A1W2PP80 73 aa10.1□□□□□ -0.79
CLIP3-201ENST00000360535 RAB29O14966 203 aa10.1□□□□□ -0.79
CLIP3-201ENST00000360535 MDS2Q8NDY4 140 aa10.1□□□□□ -0.79
CLIP3-201ENST00000360535 DDA1Q9BW61 102 aa10.1□□□□□ -0.79
CLIP3-201ENST00000360535 SPRY4Q9C004 299 aa10.1□□□□□ -0.79
CLIP3-201ENST00000360535 HIPK2Q9H2X6 1198 aa10.1□□□□□ -0.79
CLIP3-201ENST00000360535 IQCF6A8MYZ5 107 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 SLC17A3O00476 420 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 DVL1O14640 695 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 GABRA6Q16445 453 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 SLC35E4Q6ICL7 350 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 LINC01551Q86U37 167 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 TMEM18Q96B42 140 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 MS4A5Q9H3V2 200 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 MDFIC2A0A1B0GVS7 189 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 F6UZH7 168 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 CNN1P51911 297 aaKnown RBP10.09□□□□□ -0.79
CLIP3-201ENST00000360535 TAS2R60P59551 318 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 CD177Q8N6Q3 437 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 CXXC4Q9H2H0 198 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 RIF1Q5UIP0 2472 aaKnown RBP10.09□□□□□ -0.79
CLIP3-201ENST00000360535 C21orf140B9A014 251 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 NKX2-8O15522 239 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 PLXNB1O43157 2135 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 RBFOX2O43251 390 aaKnown RBP eCLIP10.09□□□□□ -0.79
CLIP3-201ENST00000360535 NUPR1O60356 82 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 PRDX2P32119 198 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 SPATA31B1PQ5VZV4 182 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 TMEM170AQ8WVE7 144 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 ANAPC16Q96DE5 110 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 GMPPAQ96IJ6 420 aaPredicted RBP10.09□□□□□ -0.79
CLIP3-201ENST00000360535 AGMATQ9BSE5 352 aa10.09□□□□□ -0.79
CLIP3-201ENST00000360535 CECR9P0C854 216 aa10.08□□□□□ -0.8
CLIP3-201ENST00000360535 KITLGP21583 273 aa10.08□□□□□ -0.8
CLIP3-201ENST00000360535 ERVK-16P61578 105 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms