RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 KCNAB3O43448 404 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 MC5RP33032 325 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 CEACAM3P40198 252 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 ARHGDIBP52566 201 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 POU2AF1Q16633 256 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 OSR1Q8TAX0 266 aaPredicted RBP15.12■□□□□ 0.01
CLN3-204ENST00000357857 LHX4Q969G2 390 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 RBMXL1Q96E39 390 aaKnown RBP15.12■□□□□ 0.01
CLN3-204ENST00000357857 RHOVQ96L33 236 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 TMEM140Q9NV12 185 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 A0A1W2PRD5 423 aa15.11■□□□□ 0.01
CLN3-204ENST00000357857 A0A1W2PRF3 423 aa15.11■□□□□ 0.01
CLN3-204ENST00000357857 A0A1W2PRM7 423 aa15.11■□□□□ 0.01
CLN3-204ENST00000357857 FAM90A26D6RGX4 464 aa15.11■□□□□ 0.01
CLN3-204ENST00000357857 SHOXO15266 292 aa15.11■□□□□ 0.01
CLN3-204ENST00000357857 SSSCA1O60232 199 aa15.11■□□□□ 0.01
CLN3-204ENST00000357857 MSMBP08118 114 aa15.11■□□□□ 0.01
CLN3-204ENST00000357857 OR9G9P0C7N8 305 aa15.11■□□□□ 0.01
CLN3-204ENST00000357857 PVALBP20472 110 aaPredicted RBP15.11■□□□□ 0.01
CLN3-204ENST00000357857 S100A11P31949 105 aa15.11■□□□□ 0.01
CLN3-204ENST00000357857 TMEM177Q53S58 311 aa15.11■□□□□ 0.01
CLN3-204ENST00000357857 LDLRAD2Q5SZI1 272 aa15.11■□□□□ 0.01
CLN3-204ENST00000357857 MOB3BQ86TA1 216 aa15.11■□□□□ 0.01
CLN3-204ENST00000357857 KCNRGQ8N5I3 272 aa15.11■□□□□ 0.01
CLN3-204ENST00000357857 FLYWCH2Q96CP2 140 aaKnown RBP15.11■□□□□ 0.01
CLN3-204ENST00000357857 AIFM2Q9BRQ8 373 aa15.11■□□□□ 0.01
CLN3-204ENST00000357857 ARL6Q9H0F7 186 aa15.11■□□□□ 0.01
CLN3-204ENST00000357857 B4DSR2 109 aa15.1■□□□□ 0.01
CLN3-204ENST00000357857 TSC22D2O75157 780 aa15.1■□□□□ 0.01
CLN3-204ENST00000357857 OPCMLQ14982 345 aa15.1■□□□□ 0.01
CLN3-204ENST00000357857 OR4C13Q8NGP0 309 aa15.1■□□□□ 0.01
CLN3-204ENST00000357857 C1orf159Q96HA4 380 aa15.1■□□□□ 0.01
CLN3-204ENST00000357857 AQP10Q96PS8 301 aa15.1■□□□□ 0.01
CLN3-204ENST00000357857 C11orf1Q9H5F2 150 aa15.1■□□□□ 0.01
CLN3-204ENST00000357857 RBMXL2O75526 392 aaKnown RBP15.09■□□□□ 0.01
CLN3-204ENST00000357857 UBE2E1P51965 193 aa15.09■□□□□ 0.01
CLN3-204ENST00000357857 VAMP2P63027 116 aa15.09■□□□□ 0.01
CLN3-204ENST00000357857 MINOS1Q5TGZ0 78 aa15.09■□□□□ 0.01
CLN3-204ENST00000357857 OR4A47Q6IF82 309 aa15.09■□□□□ 0.01
CLN3-204ENST00000357857 PRSS57Q6UWY2 283 aa15.09■□□□□ 0.01
CLN3-204ENST00000357857 LHFPL4Q7Z7J7 247 aa15.09■□□□□ 0.01
CLN3-204ENST00000357857 OR4A16Q8NH70 328 aa15.09■□□□□ 0.01
CLN3-204ENST00000357857 HARBI1Q96MB7 349 aa15.09■□□□□ 0.01
CLN3-204ENST00000357857 MINOS1-NBL1R4GNA1 71 aa15.09■□□□□ 0.01
CLN3-204ENST00000357857 IGHV3-72A0A0B4J1Y9 119 aa15.09■□□□□ 0.01
CLN3-204ENST00000357857 A0A1W2PPI3 338 aa15.09■□□□□ 0.01
CLN3-204ENST00000357857 MSGN1A6NI15 193 aa15.09■□□□□ 0.01
CLN3-204ENST00000357857 SRRM4A7MD48 611 aaKnown RBP15.09■□□□□ 0.01
CLN3-204ENST00000357857 CHST1O43916 411 aa15.09■□□□□ 0.01
CLN3-204ENST00000357857 P2RY1P47900 373 aa15.09■□□□□ 0.01
CLN3-204ENST00000357857 LGALS4P56470 323 aa15.09■□□□□ 0.01
CLN3-204ENST00000357857 RPS16P62249 146 aaKnown RBP15.09■□□□□ 0.01
CLN3-204ENST00000357857 TNFRSF9Q07011 255 aa15.09■□□□□ 0.01
CLN3-204ENST00000357857 LOXL1Q08397 574 aaPredicted RBP15.09■□□□□ 0.01
CLN3-204ENST00000357857 GON7Q9BXV9 100 aa15.09■□□□□ 0.01
CLN3-204ENST00000357857 HSPB7Q9UBY9 170 aa15.09■□□□□ 0.01
CLN3-204ENST00000357857 APCP25054 2843 aa15.08■□□□□ 0.01
CLN3-204ENST00000357857 TET2Q6N021 2002 aaPredicted RBP15.08■□□□□ 0.01
CLN3-204ENST00000357857 NAV2Q8IVL1 2488 aa15.08■□□□□ 0
CLN3-204ENST00000357857 SYNGR2O43760 224 aa15.08■□□□□ 0
CLN3-204ENST00000357857 HKR1P10072 659 aa15.08■□□□□ 0
CLN3-204ENST00000357857 RPL12P30050 165 aaKnown RBP15.08■□□□□ 0
CLN3-204ENST00000357857 OR2B8PP59922 312 aa15.08■□□□□ 0
CLN3-204ENST00000357857 RELBQ01201 579 aa15.08■□□□□ 0
CLN3-204ENST00000357857 IFITM2Q01629 132 aa15.08■□□□□ 0
CLN3-204ENST00000357857 OR8H3Q8N146 312 aa15.08■□□□□ 0
CLN3-204ENST00000357857 MS4A7Q9GZW8 240 aaPredicted RBP15.08■□□□□ 0
CLN3-204ENST00000357857 TBL2Q9Y4P3 447 aaKnown RBP15.08■□□□□ 0
CLN3-204ENST00000357857 HILPDAQ9Y5L2 63 aa15.08■□□□□ 0
CLN3-204ENST00000357857 ASH1LQ9NR48 2969 aaKnown RBP15.08■□□□□ 0
CLN3-204ENST00000357857 TRAV3A0A0B4J244 114 aa15.07■□□□□ 0
CLN3-204ENST00000357857 TRAV20A0A0B4J274 112 aa15.07■□□□□ 0
CLN3-204ENST00000357857 RNF223E7ERA6 249 aa15.07■□□□□ 0
CLN3-204ENST00000357857 MED6O75586 246 aa15.07■□□□□ 0
CLN3-204ENST00000357857 RAB40CQ96S21 281 aa15.07■□□□□ 0
CLN3-204ENST00000357857 QTRT1Q9BXR0 403 aaKnown RBP15.07■□□□□ 0
CLN3-204ENST00000357857 REG4Q9BYZ8 158 aa15.07■□□□□ 0
CLN3-204ENST00000357857 SLA2Q9H6Q3 261 aa15.07■□□□□ 0
CLN3-204ENST00000357857 ZC4H2Q9NQZ6 224 aa15.07■□□□□ 0
CLN3-204ENST00000357857 CR1P17927 2039 aa15.07■□□□□ 0
CLN3-204ENST00000357857 OOSP1A8MZH6 123 aa15.06■□□□□ 0
CLN3-204ENST00000357857 SAA1P0DJI8 122 aaPredicted RBP15.06■□□□□ 0
CLN3-204ENST00000357857 UBE2KP61086 200 aa15.06■□□□□ 0
CLN3-204ENST00000357857 AARDQ4LEZ3 155 aa15.06■□□□□ 0
CLN3-204ENST00000357857 KRTAP1-3Q8IUG1 177 aa15.06■□□□□ 0
CLN3-204ENST00000357857 LINC01356Q8N9X3 169 aa15.06■□□□□ 0
CLN3-204ENST00000357857 RBKSQ9H477 322 aa15.06■□□□□ 0
CLN3-204ENST00000357857 BET1LQ9NYM9 111 aa15.06■□□□□ 0
CLN3-204ENST00000357857 KANTRA0A1W2PQU2 76 aa15.06■□□□□ 0
CLN3-204ENST00000357857 TIMM23O14925 209 aa15.06■□□□□ 0
CLN3-204ENST00000357857 BCL2L11O43521 198 aa15.06■□□□□ 0
CLN3-204ENST00000357857 GPR137BO60478 399 aa15.06■□□□□ 0
CLN3-204ENST00000357857 IL6RP08887 468 aaPredicted RBP15.06■□□□□ 0
CLN3-204ENST00000357857 GPR157Q5UAW9 335 aa15.06■□□□□ 0
CLN3-204ENST00000357857 CCDC144NLQ6NUI1 221 aa15.06■□□□□ 0
CLN3-204ENST00000357857 PUSL1Q8N0Z8 303 aaKnown RBP15.06■□□□□ 0
CLN3-204ENST00000357857 OR2C3Q8N628 320 aa15.06■□□□□ 0
CLN3-204ENST00000357857 Q96MF0 132 aa15.06■□□□□ 0
CLN3-204ENST00000357857 HIF1ANQ9NWT6 349 aa15.06■□□□□ 0
CLN3-204ENST00000357857 AUP1Q9Y679 476 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms