RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 LGALSLQ3ZCW2 172 aaPredicted RBP5.77□□□□□ -1.49
SF3B1-201ENST00000335508 GLCCI1Q86VQ1 547 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 RPUSD4Q96CM3 377 aaKnown RBP5.77□□□□□ -1.49
SF3B1-201ENST00000335508 CABLES2Q9BTV7 478 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 AAMDCQ9H7C9 122 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 PLXNA2O75051 1894 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 A0A1B0GW15 77 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 CNN1P51911 297 aaKnown RBP5.77□□□□□ -1.49
SF3B1-201ENST00000335508 KDF1Q8NAX2 398 aaPredicted RBP5.77□□□□□ -1.49
SF3B1-201ENST00000335508 BSCL2Q96G97 398 aaPredicted RBP5.77□□□□□ -1.49
SF3B1-201ENST00000335508 LYZL4Q96KX0 146 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 ATP5SQ99766 215 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 GGACTQ9BVM4 153 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 QTRT1Q9BXR0 403 aaKnown RBP5.77□□□□□ -1.49
SF3B1-201ENST00000335508 TRAV24A0A0B4J272 114 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 CLN5O75503 358 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 SPNP16150 400 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 EWSR1Q01844 656 aaKnown RBP eCLIP5.76□□□□□ -1.49
SF3B1-201ENST00000335508 PET117Q6UWS5 81 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 ANGPTL6Q8NI99 470 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 MRPL30Q8TCC3 161 aaKnown RBP5.76□□□□□ -1.49
SF3B1-201ENST00000335508 TMEM133Q9H2Q1 129 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 M6PRP20645 277 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 C1orf147Q96MC9 270 aaPredicted RBP5.76□□□□□ -1.49
SF3B1-201ENST00000335508 TMEM140Q9NV12 185 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 IGHV3OR15-7A0A075B7D8 119 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 TRAV30A0A087WSZ9 112 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 CYB5R3P00387 301 aaPredicted RBP5.76□□□□□ -1.49
SF3B1-201ENST00000335508 IGHV3-7P01780 117 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 SLC25A16P16260 332 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 AVPI1Q5T686 147 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 WDR25Q64LD2 544 aaPredicted RBP5.76□□□□□ -1.49
SF3B1-201ENST00000335508 TMEM182Q6ZP80 229 aaPredicted RBP5.76□□□□□ -1.49
SF3B1-201ENST00000335508 STPG3Q8N7X2 389 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 SMIM8Q96KF7 97 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 TMEM56-RWDD3S4R434 201 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 B4DSR2 109 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 KCNAB3O43448 404 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 PPOXP50336 477 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 ZNF418Q8TF45 676 aaPredicted RBP5.76□□□□□ -1.49
SF3B1-201ENST00000335508 PSMG3Q9BT73 122 aaPredicted RBP5.76□□□□□ -1.49
SF3B1-201ENST00000335508 RPS10P5Q9NQ39 176 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 MBNL3Q9NUK0 354 aaKnown RBP5.76□□□□□ -1.49
SF3B1-201ENST00000335508 HIST1H1BP16401 226 aaKnown RBP5.76□□□□□ -1.49
SF3B1-201ENST00000335508 FGF7P21781 194 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 CD1BP29016 333 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 GNB1P62873 340 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 ID3Q02535 119 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 TNFRSF9Q07011 255 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 STPG2Q8N412 459 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 RELL2Q8NC24 303 aaPredicted RBP5.76□□□□□ -1.49
SF3B1-201ENST00000335508 OR4D10Q8NGI6 311 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 SSC4DQ8WTU2 575 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 C19orf12Q9NSK7 152 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 CHD6Q8TD26 2715 aa5.76□□□□□ -1.49
SF3B1-201ENST00000335508 AKR1C3P42330 323 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 DYRK2Q92630 601 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 SERTAD4Q9NUC0 356 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 OR1A1Q9P1Q5 309 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 DVL1O14640 695 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 SRSF10O75494 262 aaKnown RBP5.75□□□□□ -1.49
SF3B1-201ENST00000335508 ZNF497Q6ZNH5 498 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 PNKDQ8N490 385 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 C12orf57Q99622 126 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 SIRT7Q9NRC8 400 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 GNG13Q9P2W3 67 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 PPP5D1E7EU14 171 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 CD55P08174 381 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 RNF224P0DH78 156 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 DVL1P1P54792 670 aaPredicted RBP5.75□□□□□ -1.49
SF3B1-201ENST00000335508 GUK1Q16774 197 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 OR10G4Q8NGN3 311 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 OR10G9Q8NGN4 311 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 OR10G7Q8NGN6 311 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 Q8TCH9 128 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 TMEM190Q8WZ59 177 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 LYRM2Q9NU23 88 aaPredicted RBP5.75□□□□□ -1.49
SF3B1-201ENST00000335508 KAAG1Q9UBP8 84 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 FAM90A9PA6NNJ1 464 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 TGFAP01135 160 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 GATA3P23771 443 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 RSPO1Q2MKA7 263 aaPredicted RBP5.75□□□□□ -1.49
SF3B1-201ENST00000335508 TMEM178BH3BS89 294 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 MLNRO43193 412 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 PSPNO60542 156 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 Q6ZSR3 168 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 PLPPR1Q8TBJ4 325 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 JMJD8Q96S16 334 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 SSBP3Q9BWW4 388 aaPredicted RBP5.75□□□□□ -1.49
SF3B1-201ENST00000335508 TMEM231Q9H6L2 316 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 AUP1Q9Y679 476 aa5.75□□□□□ -1.49
SF3B1-201ENST00000335508 A0A1W2PRD5 423 aa5.74□□□□□ -1.49
SF3B1-201ENST00000335508 A0A1W2PRF3 423 aa5.74□□□□□ -1.49
SF3B1-201ENST00000335508 A0A1W2PRM7 423 aa5.74□□□□□ -1.49
SF3B1-201ENST00000335508 PRTN3P24158 256 aa5.74□□□□□ -1.49
SF3B1-201ENST00000335508 ATP6V0CP27449 155 aa5.74□□□□□ -1.49
SF3B1-201ENST00000335508 ERVK11-1P61568 191 aa5.74□□□□□ -1.49
SF3B1-201ENST00000335508 TMEM187Q14656 261 aa5.74□□□□□ -1.49
SF3B1-201ENST00000335508 MINOS1Q5TGZ0 78 aa5.74□□□□□ -1.49
SF3B1-201ENST00000335508 DPPA3Q6W0C5 159 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms