RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 LHX4Q969G2 390 aa12.27□□□□□ -0.45
CLCNKA-201ENST00000331433 TVP23CQ96ET8 276 aa12.27□□□□□ -0.45
CLCNKA-201ENST00000331433 NPCDR1Q9BY65 106 aa12.27□□□□□ -0.45
CLCNKA-201ENST00000331433 GFOD1Q9NXC2 390 aa12.27□□□□□ -0.45
CLCNKA-201ENST00000331433 SAA2-SAA4A0A096LPE2 208 aa12.26□□□□□ -0.45
CLCNKA-201ENST00000331433 TRGV10A0A0A0MS01 117 aa12.26□□□□□ -0.45
CLCNKA-201ENST00000331433 SAA2P0DJI9 122 aaPredicted RBP12.26□□□□□ -0.45
CLCNKA-201ENST00000331433 DEFA4P12838 97 aa12.26□□□□□ -0.45
CLCNKA-201ENST00000331433 TNFSF4P23510 183 aa12.26□□□□□ -0.45
CLCNKA-201ENST00000331433 FOXC1Q12948 553 aa12.26□□□□□ -0.45
CLCNKA-201ENST00000331433 PRR30Q53SZ7 412 aaPredicted RBP12.26□□□□□ -0.45
CLCNKA-201ENST00000331433 ADAM5Q6NVV9 412 aa12.26□□□□□ -0.45
CLCNKA-201ENST00000331433 LINC00518Q8N0U6 118 aa12.26□□□□□ -0.45
CLCNKA-201ENST00000331433 CA5BP1Q8WTZ4 195 aa12.26□□□□□ -0.45
CLCNKA-201ENST00000331433 TMPRSS5Q9H3S3 457 aa12.26□□□□□ -0.45
CLCNKA-201ENST00000331433 DPRXA6NFQ7 191 aa12.26□□□□□ -0.45
CLCNKA-201ENST00000331433 MMP23AO75900 390 aa12.26□□□□□ -0.45
CLCNKA-201ENST00000331433 ERVK-16P61578 105 aa12.26□□□□□ -0.45
CLCNKA-201ENST00000331433 FFAR4Q5NUL3 377 aa12.26□□□□□ -0.45
CLCNKA-201ENST00000331433 GFRALQ6UXV0 394 aa12.26□□□□□ -0.45
CLCNKA-201ENST00000331433 NUP37Q8NFH4 326 aa12.26□□□□□ -0.45
CLCNKA-201ENST00000331433 OR10G4Q8NGN3 311 aa12.26□□□□□ -0.45
CLCNKA-201ENST00000331433 TMEM140Q9NV12 185 aa12.26□□□□□ -0.45
CLCNKA-201ENST00000331433 RBFOX2O43251 390 aaKnown RBP eCLIP12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 NQO2P16083 231 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 GNG10P50151 68 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 SNRPEP62304 92 aaKnown RBP12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 BSPH1Q075Z2 132 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 LYG1Q8N1E2 194 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 OR10G9Q8NGN4 311 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 OR10G7Q8NGN6 311 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 DDB2Q92466 427 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 YPEL4Q96NS1 127 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 PTPRQQ9UMZ3 2332 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 SPTBN4Q9H254 2564 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 THBDP07204 575 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 OR4A8P0C604 315 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 AGAP20933 346 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 RAB7AP51149 207 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 GNB2P62879 340 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 RELBQ01201 579 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 ADIPOQQ15848 244 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 VWC2Q2TAL6 325 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 AARDQ4LEZ3 155 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 ZNF343Q6P1L6 599 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 ZNF788Q6ZQV5 615 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 SPACA3Q8IXA5 215 aa12.25□□□□□ -0.45
CLCNKA-201ENST00000331433 IFNA10P01566 189 aa12.24□□□□□ -0.45
CLCNKA-201ENST00000331433 IRF2P14316 349 aa12.24□□□□□ -0.45
CLCNKA-201ENST00000331433 ERVFRD-1P60508 538 aa12.24□□□□□ -0.45
CLCNKA-201ENST00000331433 SPCS3P61009 180 aa12.24□□□□□ -0.45
CLCNKA-201ENST00000331433 SLC35E3Q7Z769 313 aa12.24□□□□□ -0.45
CLCNKA-201ENST00000331433 FAM216AQ8WUB2 273 aa12.24□□□□□ -0.45
CLCNKA-201ENST00000331433 ZNF251Q9BRH9 671 aa12.24□□□□□ -0.45
CLCNKA-201ENST00000331433 NCOR1P1Q9H4R4 102 aa12.24□□□□□ -0.45
CLCNKA-201ENST00000331433 VAX2Q9UIW0 290 aa12.24□□□□□ -0.45
CLCNKA-201ENST00000331433 URGCP-MRPS24S4R325 110 aa12.24□□□□□ -0.45
CLCNKA-201ENST00000331433 POLEQ07864 2286 aa12.24□□□□□ -0.45
CLCNKA-201ENST00000331433 TMPRSS2O15393 492 aa12.23□□□□□ -0.45
CLCNKA-201ENST00000331433 HOXA1P49639 335 aaPredicted RBP12.23□□□□□ -0.45
CLCNKA-201ENST00000331433 ZNF709Q8N972 641 aa12.23□□□□□ -0.45
CLCNKA-201ENST00000331433 HEYLQ9NQ87 328 aaPredicted RBP12.23□□□□□ -0.45
CLCNKA-201ENST00000331433 ZNRD1Q9P1U0 126 aa12.23□□□□□ -0.45
CLCNKA-201ENST00000331433 TNCP24821 2201 aa12.23□□□□□ -0.45
CLCNKA-201ENST00000331433 FAM90A9PA6NNJ1 464 aa12.23□□□□□ -0.45
CLCNKA-201ENST00000331433 RRHO14718 337 aa12.23□□□□□ -0.45
CLCNKA-201ENST00000331433 MDKP21741 143 aaPredicted RBP12.23□□□□□ -0.45
CLCNKA-201ENST00000331433 MRPS11P82912 194 aaKnown RBP12.23□□□□□ -0.45
CLCNKA-201ENST00000331433 ZNF383Q8NA42 475 aa12.23□□□□□ -0.45
CLCNKA-201ENST00000331433 OR4S2Q8NH73 311 aa12.23□□□□□ -0.45
CLCNKA-201ENST00000331433 GATAD1Q8WUU5 269 aa12.23□□□□□ -0.45
CLCNKA-201ENST00000331433 ELOVL5Q9NYP7 299 aa12.23□□□□□ -0.45
CLCNKA-201ENST00000331433 SPTA1P02549 2419 aa12.23□□□□□ -0.45
CLCNKA-201ENST00000331433 CTXND1A0A1B0GTU2 59 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 SMCO3A2RU48 225 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 IFNA1P01562 189 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 NDUFB7P17568 137 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 CD1BP29016 333 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 VDAC2P45880 294 aaPredicted RBP12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 ABHD12Q8N2K0 398 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 ZNF439Q8NDP4 499 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 RELNP78509 3460 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 A0A087WWC5 75 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 C17orf100A8MU93 164 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 ITGB1BP1O14713 200 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 MBP02144 154 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 KIR2DS2P43631 304 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 CD81P60033 236 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 TBR1Q16650 682 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 GCSAMLQ5JQS6 135 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 TEX36Q5VZQ5 186 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 HEPN1Q6WQI6 88 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 IQCF2Q8IXL9 164 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 Q8N7P7 452 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 RAB24Q969Q5 203 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 RHOVQ96L33 236 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 SCNM1Q9BWG6 230 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 RAB9BQ9NP90 201 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 IDI2-AS1Q9NZ38 188 aa12.22□□□□□ -0.45
CLCNKA-201ENST00000331433 GFRA3O60609 400 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms