RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 MMP23AO75900 390 aa11.73□□□□□ -0.53
C9orf3-202ENST00000297979 EIF5AP63241 154 aaKnown RBP11.73□□□□□ -0.53
C9orf3-202ENST00000297979 RPL39P5Q59GN2 51 aa11.73□□□□□ -0.53
C9orf3-202ENST00000297979 FAM74A1Q5RGS3 127 aa11.73□□□□□ -0.53
C9orf3-202ENST00000297979 COMMD7Q86VX2 200 aa11.73□□□□□ -0.53
C9orf3-202ENST00000297979 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.73□□□□□ -0.53
C9orf3-202ENST00000297979 CD300LFQ8TDQ1 290 aa11.73□□□□□ -0.53
C9orf3-202ENST00000297979 LAMP3Q9UQV4 416 aa11.73□□□□□ -0.53
C9orf3-202ENST00000297979 A0A1W2PPE3 182 aa11.73□□□□□ -0.53
C9orf3-202ENST00000297979 SOD3P08294 240 aa11.73□□□□□ -0.53
C9orf3-202ENST00000297979 G6PCP35575 357 aa11.73□□□□□ -0.53
C9orf3-202ENST00000297979 LINC00205P59089 165 aa11.73□□□□□ -0.53
C9orf3-202ENST00000297979 NCR3LG1Q68D85 454 aa11.73□□□□□ -0.53
C9orf3-202ENST00000297979 TMEM200BQ69YZ2 307 aa11.73□□□□□ -0.53
C9orf3-202ENST00000297979 RPL7L1Q6DKI1 246 aaKnown RBP11.73□□□□□ -0.53
C9orf3-202ENST00000297979 REC114Q7Z4M0 266 aa11.73□□□□□ -0.53
C9orf3-202ENST00000297979 SMIM3Q9BZL3 60 aa11.73□□□□□ -0.53
C9orf3-202ENST00000297979 GSX1Q9H4S2 264 aaPredicted RBP11.73□□□□□ -0.53
C9orf3-202ENST00000297979 KIAA1324LA8MWY0 1029 aaPredicted RBP11.73□□□□□ -0.53
C9orf3-202ENST00000297979 KRASP01116 189 aa11.73□□□□□ -0.53
C9orf3-202ENST00000297979 GAPDHP04406 335 aaKnown RBP11.73□□□□□ -0.53
C9orf3-202ENST00000297979 CAV2P51636 162 aa11.73□□□□□ -0.53
C9orf3-202ENST00000297979 NARS2Q96I59 477 aaKnown RBP11.73□□□□□ -0.53
C9orf3-202ENST00000297979 LYRM2Q9NU23 88 aaPredicted RBP11.73□□□□□ -0.53
C9orf3-202ENST00000297979 RAB29O14966 203 aa11.72□□□□□ -0.53
C9orf3-202ENST00000297979 CHST1O43916 411 aa11.72□□□□□ -0.53
C9orf3-202ENST00000297979 DANCRP0C864 163 aa11.72□□□□□ -0.53
C9orf3-202ENST00000297979 P0C879 139 aa11.72□□□□□ -0.53
C9orf3-202ENST00000297979 DAOP14920 347 aa11.72□□□□□ -0.53
C9orf3-202ENST00000297979 CCL3L1P16619 93 aa11.72□□□□□ -0.53
C9orf3-202ENST00000297979 EWSR1Q01844 656 aaKnown RBP eCLIP11.72□□□□□ -0.53
C9orf3-202ENST00000297979 CLEC9AQ6UXN8 241 aa11.72□□□□□ -0.53
C9orf3-202ENST00000297979 HEPN1Q6WQI6 88 aa11.72□□□□□ -0.53
C9orf3-202ENST00000297979 DTX2Q86UW9 622 aa11.72□□□□□ -0.53
C9orf3-202ENST00000297979 PDZD9Q8IXQ8 264 aa11.72□□□□□ -0.53
C9orf3-202ENST00000297979 ZNF479Q96JC4 524 aa11.72□□□□□ -0.53
C9orf3-202ENST00000297979 ACACBO00763 2458 aa11.72□□□□□ -0.53
C9orf3-202ENST00000297979 SAA2-SAA4A0A096LPE2 208 aa11.72□□□□□ -0.53
C9orf3-202ENST00000297979 FAM24AA6NFZ4 105 aa11.72□□□□□ -0.53
C9orf3-202ENST00000297979 C19orf84I3L1E1 186 aa11.72□□□□□ -0.53
C9orf3-202ENST00000297979 SAA2P0DJI9 122 aaPredicted RBP11.72□□□□□ -0.53
C9orf3-202ENST00000297979 SLC25A31Q9H0C2 315 aa11.72□□□□□ -0.53
C9orf3-202ENST00000297979 USF3Q68DE3 2245 aa11.72□□□□□ -0.53
C9orf3-202ENST00000297979 SMG1Q96Q15 3661 aaKnown RBP11.71□□□□□ -0.53
C9orf3-202ENST00000297979 FCGR3BO75015 233 aa11.71□□□□□ -0.53
C9orf3-202ENST00000297979 JTBO76095 146 aa11.71□□□□□ -0.53
C9orf3-202ENST00000297979 MRPS11P82912 194 aaKnown RBP11.71□□□□□ -0.53
C9orf3-202ENST00000297979 LYG1Q8N1E2 194 aa11.71□□□□□ -0.53
C9orf3-202ENST00000297979 NEU4Q8WWR8 484 aaPredicted RBP11.71□□□□□ -0.53
C9orf3-202ENST00000297979 RAB40CQ96S21 281 aa11.71□□□□□ -0.53
C9orf3-202ENST00000297979 IGSF23A1L1A6 192 aa11.71□□□□□ -0.54
C9orf3-202ENST00000297979 TMEM50AO95807 157 aa11.71□□□□□ -0.54
C9orf3-202ENST00000297979 LINC00614P0C842 121 aa11.71□□□□□ -0.54
C9orf3-202ENST00000297979 RRASP10301 218 aa11.71□□□□□ -0.54
C9orf3-202ENST00000297979 KIR2DS2P43631 304 aa11.71□□□□□ -0.54
C9orf3-202ENST00000297979 NHLH2Q02577 135 aa11.71□□□□□ -0.54
C9orf3-202ENST00000297979 SLC25A48Q6ZT89 311 aaKnown RBP11.71□□□□□ -0.54
C9orf3-202ENST00000297979 ODF3L1Q8IXM7 274 aa11.71□□□□□ -0.54
C9orf3-202ENST00000297979 TMEM252Q8N6L7 170 aa11.71□□□□□ -0.54
C9orf3-202ENST00000297979 CXorf58Q96LI9 332 aa11.71□□□□□ -0.54
C9orf3-202ENST00000297979 YLPM1P49750 1951 aaKnown RBP11.71□□□□□ -0.54
C9orf3-202ENST00000297979 A0A1W2PPR1 153 aa11.7□□□□□ -0.54
C9orf3-202ENST00000297979 FAM90A26D6RGX4 464 aa11.7□□□□□ -0.54
C9orf3-202ENST00000297979 RBFOX2O43251 390 aaKnown RBP eCLIP11.7□□□□□ -0.541e-7■■■■□ 22.6
C9orf3-202ENST00000297979 C1orf229Q6ZS94 237 aaPredicted RBP11.7□□□□□ -0.54
C9orf3-202ENST00000297979 SMIM15Q7Z3B0 74 aa11.7□□□□□ -0.54
C9orf3-202ENST00000297979 TMED6Q8WW62 240 aa11.7□□□□□ -0.54
C9orf3-202ENST00000297979 S1PR3Q99500 378 aa11.7□□□□□ -0.54
C9orf3-202ENST00000297979 ABCA4P78363 2273 aa11.7□□□□□ -0.54
C9orf3-202ENST00000297979 SYNGR2O43760 224 aa11.7□□□□□ -0.54
C9orf3-202ENST00000297979 HPRT1P00492 218 aa11.7□□□□□ -0.54
C9orf3-202ENST00000297979 IGFBP2P18065 325 aa11.7□□□□□ -0.54
C9orf3-202ENST00000297979 ZP3P21754 424 aa11.7□□□□□ -0.54
C9orf3-202ENST00000297979 PAX9P55771 341 aa11.7□□□□□ -0.54
C9orf3-202ENST00000297979 ERVFRD-1P60508 538 aa11.7□□□□□ -0.54
C9orf3-202ENST00000297979 H2BFWTQ7Z2G1 175 aa11.7□□□□□ -0.54
C9orf3-202ENST00000297979 UBAC2Q8NBM4 344 aa11.7□□□□□ -0.54
C9orf3-202ENST00000297979 DDB2Q92466 427 aa11.7□□□□□ -0.54
C9orf3-202ENST00000297979 RAB39BQ96DA2 213 aa11.7□□□□□ -0.54
C9orf3-202ENST00000297979 BORCS7-ASMTA0A0B4J1R7 106 aa11.69□□□□□ -0.54
C9orf3-202ENST00000297979 THBS3P49746 956 aa11.69□□□□□ -0.54
C9orf3-202ENST00000297979 RPL23AP62750 156 aaKnown RBP11.69□□□□□ -0.54
C9orf3-202ENST00000297979 TMEM155Q4W5P6 130 aa11.69□□□□□ -0.54
C9orf3-202ENST00000297979 MIDNQ504T8 468 aa11.69□□□□□ -0.54
C9orf3-202ENST00000297979 AVPI1Q5T686 147 aa11.69□□□□□ -0.54
C9orf3-202ENST00000297979 R3HDM4Q96D70 268 aa11.69□□□□□ -0.54
C9orf3-202ENST00000297979 WFDC1Q9HC57 220 aa11.69□□□□□ -0.54
C9orf3-202ENST00000297979 SIRT7Q9NRC8 400 aa11.69□□□□□ -0.54
C9orf3-202ENST00000297979 MED9Q9NWA0 146 aa11.69□□□□□ -0.54
C9orf3-202ENST00000297979 LY6HO94772 140 aa11.69□□□□□ -0.54
C9orf3-202ENST00000297979 TNFRSF9Q07011 255 aa11.69□□□□□ -0.54
C9orf3-202ENST00000297979 BAXQ07812 192 aa11.69□□□□□ -0.54
C9orf3-202ENST00000297979 EIF5AL1Q6IS14 154 aaKnown RBP11.69□□□□□ -0.54
C9orf3-202ENST00000297979 ADTRPQ96IZ2 230 aa11.69□□□□□ -0.54
C9orf3-202ENST00000297979 WSB1Q9Y6I7 421 aa11.69□□□□□ -0.54
C9orf3-202ENST00000297979 A0A087X0M5 115 aa11.68□□□□□ -0.54
C9orf3-202ENST00000297979 A0A1B0GX30 115 aa11.68□□□□□ -0.54
C9orf3-202ENST00000297979 DLX6P56179 175 aa11.68□□□□□ -0.54
C9orf3-202ENST00000297979 ZNF295-AS1Q8N0V1 137 aa11.68□□□□□ -0.54
C9orf3-202ENST00000297979 OR4S2Q8NH73 311 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms